RNA id: XM_039795961.1


Basic Information

Item Value
RNA id XM_039795961.1
length 2166
RNA type mRNA
GC content 0.43
exon number 11
gene id cers3a
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 9333229 ~ 9378611 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTGCTTTCcggaggggagaaaaaaaaccttccCAGGTGATTGTGGCTGGGCTGGGTGTGACCCTTAAGAATGTCAAACAAAGAGAGAGTGGCTGGCTGCTTGTCCTAACGGGGGAATAGAGGATTTTACCATCCGTGTTAATTTCCCACAGCAAGCACAGCAGTCAGCCGGCGTGGAAACAACGGCCCTCACCTGCTCTCTCTGACAGCACTGACAGTGGAACGGGTGGAGGGATGTTTGACACACTGTATGAGTGGTTCTGGTGGGAAAGAATATGGCTGCCTGTGAACCTGACATGGGCTGACCTGGAGGACAGGGAGGGCTGGGTCTATGCCAAAGCCTCACACCTCTACGTCACTGTCCCCTACACCTTTGCTTTCTTACTCATCAGATACCTGTTTGAAAGGTGGATAGCAACACCAATTGCTGTCTCTGCTGGGATCAAGCAAAGAGTCCATCTGAAAGCAGAAGACAACCCCATCTTGGAACATTACTACATTACTCAGTGTAGAAATCCTGCTCAGGCAGACATTGATGGGCTGTCTAAGAAAAGCAGTTTGTCAGTGAGACAAGTTGAACGCTGGTTCAGAAGAAGACGCAGTCAGGACCTTCCCGGAGTCCTAAAGAAGTTCAGAGAGGCCAGCTGGAGGTTTGTCTTCTACCTGTTGGCGTTCATAGGAGGAATAGTAGCACTGTACGATAAAGAATGGTTTTATGACACTCGGGAAGTGTGGACAGGTTTTCCAAAGCAGTCCATGCTGGAGTCTCAGTACTGGTATTATATCTTGGAGATGAGCTTCTATGGCTCTCTTCTCTTAAGCGTTGCCTTTGATGTCAAGAGAAAGGACTTTAAGGAGCAAATCATCCACCACTTGGCCACACTGGTTCTCTTATCATTTTCCTGGTGTGCCAACTACATTCGTATTGGAACACTGGTCATGATCGTCCATGATGCCTCTGATGTTTTATTGGAGTCTGCCAAATTATTCAACTATGCCAAATGGGAGAAAACCTGCCAAAGTCTTTTTGTTCTGTTTGCCATGGTGTTTATGGTAACACGACTGATCATCTTCCCATTCTGGCTGATCCACTGTACCTGGGTCTACCCTGTTCAACACTACCCTGCCTTCTTTGGCTACTACTTCTTCAATGTGATGCTGGTGGTCCTTCTCTGTCTGCACATATTCTGGGCCTACCTCATTCTCTGCATGATCAGAAAATTCATGTTTGGCACTCTGACCAGAGATGAGAGAAGTGACattgaagaggaagaagaggaagagagcagCCTGACAGAGGATGAATGTAAGGACGAGCACAAGCTTGGCAATGGATTGACAGTTGGTGAGAAGAAGGACAAGAGAAACGGCTTTCAGTGCTCGTCTCCACCAGAGAACATCTGCCGGTCAAAGACTGTGTACTGACTTGTGCTCAGTATGATCACTAGAGCCAGAGAGATGTGAGAAATAGAACAATGGcaaattttttcaaaacatttcatacaatatggaccaaaaaatAAGTTTCTTCAGATGCTGGAACACAAAGCCCAGAAAATTGCTTGCTGTTTTCACAGTGCTTTGAACTGCACACACGTACAACGAGAGACTTTAGCTGTATTCGCACAGGACTAGTATTACCAGGGGACCTCATGTGATTTACAAATAACTCCCCCACATCTTTGCTTCGTGTAGCACATTCGAGGTACCCCCCAGGTTTCCacaagttaaatttaagactttttaagaacATTTAGAATCAAATTTAATACCTTAACTTCATGGCCATACTAGCAAAAGTATATAGGATATTACGGAATATCAGAAAGGATTTGACGCTATAAAAAGAGTTATTTACCAAGTACttaaatttaacattttattgtagTACTCATAGCAAGTATGCATACATGCTTTGTGACGAAACAATGGAGTTATTCAATCGTATGAAAGGACAATACATATTTTAGACCTTTGTGAACTAAATTTAAGACTTTCTAAagaaatttaagacttttaaggccttatttttggaatatttattttttagagtTTTAAGACCCCGCAGGTACCCTGGCGAAATATGGTGGGTAATTAGTGGTggacagtgttggggagtaacggaatacatgtaacggcgttacgtattcagaatacaaattatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35185 lncRNA upstream 33022 9299488 ~ 9300207 (+) True G26297
TU35161 lncRNA upstream 88776 9240665 ~ 9244453 (+) True G26276
TU35158 lncRNA upstream 94664 9236352 ~ 9238565 (+) True G26273
TU35098 lncRNA upstream 512245 8820753 ~ 8820984 (+) True G26218
TU35097 lncRNA upstream 516613 8816407 ~ 8816616 (+) True G26217
TU35228 lncRNA downstream 82306 9460917 ~ 9473100 (+) True G26335
TU35243 lncRNA downstream 228132 9606743 ~ 9608997 (+) True G26347
TU35268 lncRNA downstream 274973 9653584 ~ 9655329 (+) False asb7
TU35279 lncRNA downstream 343612 9722223 ~ 9722683 (+) True G26367
TU35280 lncRNA downstream 348581 9727192 ~ 9727740 (+) True G26368
XM_039796102.1 mRNA upstream 36512 9261211 ~ 9296717 (+) True LOC120556464
XM_039795212.1 mRNA upstream 241719 9056333 ~ 9091510 (+) True abhd17c
XM_039794377.1 mRNA upstream 582349 8745162 ~ 8750880 (+) True mesd
XM_039795650.1 mRNA upstream 711517 8604276 ~ 8621712 (+) True stard5
XM_039796112.1 mRNA upstream 731552 8559214 ~ 8601677 (+) False LOC120556467
XM_039795147.1 mRNA downstream 12497 9391108 ~ 9604462 (+) True adamts17
XM_039794581.1 mRNA downstream 253396 9632007 ~ 9642958 (+) True lins1
XM_039794583.1 mRNA downstream 253396 9632007 ~ 9642958 (+) False lins1
XM_039794585.1 mRNA downstream 274967 9653578 ~ 9677027 (+) False asb7
XM_039794586.1 mRNA downstream 276002 9654613 ~ 9677027 (+) False asb7
TU35121 other upstream 177886 9068729 ~ 9155343 (+) True G26236
TU35083 other upstream 572928 8753701 ~ 8760301 (+) True G26205
TU34538 other upstream 3043453 6288190 ~ 6289776 (+) False LOC120555541
TU34541 other upstream 3043453 6289056 ~ 6289776 (+) False LOC120555541
TU34546 other upstream 3045152 6287048 ~ 6288077 (+) True G25743
TU35242 other downstream 188220 9566831 ~ 9604436 (+) False adamts17
TU35313 other downstream 468666 9847277 ~ 9860000 (+) True aldh1a3
XR_005638880.1 other downstream 2653010 12031621 ~ 12031728 (+) True LOC120556595
TU36106 other downstream 3731146 13109757 ~ 13110339 (+) True G27086
TU36145 other downstream 3856624 13235235 ~ 13237819 (+) True LOC120556202

Expression Profile