RNA id: XM_039795147.1


Basic Information

Item Value
RNA id XM_039795147.1
length 3665
RNA type mRNA
GC content 0.53
exon number 23
gene id adamts17
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 9391108 ~ 9604462 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGTGTAGGCGTACCCTGCGCTAGAAGTCACTCCAGCCTGAATTACTGCAACTTCTCCAAGTTTTGGAAAAACTGCGCCGTCTGCTCAGTGCTTTGCAAAGCGCTTCAGTCCCCTCACAATAAAATCACTCACCTCTTCCAGTTTATTCTATCCTGCTTTGCCTTATCATGCATAACAGCCATGTCACCCATgtgctcttctctcttctctgcaTCGCATTGAGTGCCCAGTCTGAGCCAGAGATAGACGAAGTGGTTCCCAGGCTGCTGTCCGGGCAGGAGGCGCACCTGTCCCCGGACCACACTGCCCGCACACTGCGGCGCCGCGGCCAGCGCTCCCTGGACGCCCCGGGTGGAGGACATTCTGACCCGGATAACATAATTCTGTCACTGCCGGCTTTCGGAAGGAGTCTGTATTTAAATCTGACGCGGGACAGCGCGTTTCTGTCAGGGGACTTCGTGGTCGAGGAGAGGCTTGGGGAGCAGAGCGCAGCGGTGAGCCGCTTATCCACGAAGCAGCTGTGCTTTTACTCCGGCTCCATTATCAACCACACTGACTCCCTGGCATCACTGAGCACCTGTGGCGGCCTGACTGGGCTCATCCAGCTCGGGGAGGTCAGCCTATTCATTCAGCCGGTGGGTGAAAGTGGCCCCTCCCAGTCGTTCTCCGGACTAAAACACCGGCTGCTGCGAAACAGACGCTGTGCCAAGACCAGCTCTGCTCCAGATGTTGACCAGCCGAACTACTGTGGGACTGTACAAGggaagaagaagaagatgtcAAAAGTGGACGAGGAGGGTCGCGGCAAGAGAAACGTCATTCGCTTGCACGAAGCATACACAGTGGAGACAGTGGTGGTGGCAGACTCCGACATGGTGCACTACCACGGGGCCGAGGCGGCACAGAGGTTCTTGCTGACAGTCATGAACATGGTCTACAACATGTTCCACCACCAGAGTCTGGGAGTCAGGATCAACATTCGTGTCACCAAGCTGGTGCTGCTTCATAGACGCCCAGAGAAGCTAAAGGTGGGCCATCATGGAGAAAGGTCTCTGGAGAGCTTCTGTCATTGGCAGTATCAGGAGTTTGGGGGTCCCCGGTACCTCGGCACCAACCACGTTCCTGGGGGAAAGGATGACATCCCACCAGTGGATACTGCTGTGCTGGTCACCAGGACAAATTTCTGCGTTCATAAAGACGAACCCTGTGATACTGTGGGTATTGCTTATCTGGGGGGTGTCTGCAGTGCCAAGAGGAAGTGTGTGTTAGCAGAAGACAATGGACTCAATCTGGCCTTCACCATTGCTCACGAACTGGGACACAACATGGGCATGAGCCATGATGACGACCATGCCACGTGCACTGGTCACTCGGACATCATGTCTGGGGAATGGGTGAAAGGAAGAAACCCCAGCGACCTGTCCTGGTCCTCCTGTAGCCGCGACGACCTGGAGAACTTCCTCAGGTCCAAAGCAAGTGGCTGCCTTCTGCACACCGACCCCAGAAGCCGTTACCAGGTCCGGCTTCCTCCCAAGCTGCCAGGCATGCACTACAGTGTGGATGAACAGTGCCAGATCCTGTTTGGATCTAATGCCACTTTCTGCAATGACATGGAGcacttGATGTGCGCTGGCCTGTGGTGTTTAGTAGAGGGAGATGCATCCTGCAAGACCAAACTGGATTCTCCTCTGGATGGAACCGAGTGTGGAGCAGACAAGtGGTGCAGGGCAGGCGAGTGTGTCAGTAAGACTCCCATCCCTCAGCATGTGGACGGGGACTGGAGTCCATGGAGCCAGTGGAGCATGTGTAGCAGGACCTGCGGTACTGGAGTCCAGTTCAGACAGAGGAAATGTGACAACCCTCCgccTGGACCTGGTGGGCGACACTGCCAGAAGTCCAGTGTGGAGCACAAGGCTTGTGAGCGTCCTCCCTGTCCCAAGGGAGCGCCCAGCTTCAGAGACCTGCAGTGTCTGTCTTACAACAGACACGCAAACAGCAAGAAGAAGGGCAGCATGCTGACTGCTATTATTAATGatgagaAGCCGTGCGTGTTGTTCTGCAGCCCAGTAGGTCGAGATGTCCCAGTCCTGATGGCTGACAGAGTGATGGACGGGACGCCCTGCGGACCATACGAGGCCGACCTGTGTGTGAACGGAAGGTGTCAGAAAATTGGCTGTGACGGCATCATCGGCTCTTCAGCCAAAGAGGACCGCTGTGGTGTTTGTAATGGAGATGGGCGCTCCTGTAAGATAGTGAGAGGAGACTTCAACCACACCAAAGGAATGGGCTACATCGAAGCTTTGGTTATCCCTGCAGGAGCCAGGAGGATCAAAGTTGTGGAGGACAAACCCTCACATAGCTTTCTGGATGACAATGGCCCTCTGGGGACTCGGTCCCCAGGGACCTCATTTCCCACGACTCTGCCGGCCAATGGTGGTGCACAGGGCTTCAGAGAGCCAGGGATGAGGGCGAGCAGGCAGGTGCTGCTCTTTCATGACCAGAGCTACGGGATCCACTATGAGTACACTGTGTCCCTGAACACAACTCAGGACAGGAGCAGTGAGGAGCCAAGGGAGCCAGAGTATCTCTACATCTGGACACACAGCAGCTGGCAGGACTGTACTGTTCAATGTGGaggaggtGAGAGAAGGACAGTGGTTTCCTGTATGAGAATAGTCAATAAAACAATGGAGGCTGTCAACGATAGCTACTGTCAACCTGAGAACCGACCACACCCCCAAGTACGATTCTGCAACTCTCACCCCTGCCAGTAtcgGTGGGTGACAGGAGAGTGGGGATCCTGCTCCGTCACATGTGGTAAAGGTGTTCAGCAGAGGGACGTGGTTTGTGTTTACCATTTTCAGAATGGCTCACTCATCCACACCAGGGATCTGTATTGCCAAGGAGGAAAACCTCCTGTTGTGCAGGGCTGTGAGGGCCGCCTCTGCCTCACTTTGTGGGAGGCTTCAGAATGGTCCAAGTGTTCATCGGGCTGTGGTCCAGGTGTTCACAAGCGGACGGTGTCATGTACAAACCCTCAGGGTCTGTGTGATCCTCTGTCCCAGCCCACTCAGGAGGAGCCCTGTGAGGACTACTCTAGATGTTACGAATGGAAGACTGGAGACTGGTCCAAGTGCTCGTCATCCTGCGGGAAGGGCCTGCAGTCGCGAGTGGTCCAgtgtatgcacaaagtgactggACGTCATGGTAACGACTGCCCAGTGACGCTGAGACCACCGACCTACCGGCCCTGTCACCATGGTACCTGCAACGACAAAATCAATGTGAACACCATTACCTCTCCCAGGCTAGCTGCTCTGACCTACAAATGCATGGGGGACCAGTGGACAGTGCACTGTCGTGTGATCCGAGAGAAGAACCTTTGTCAGGACATGAGGTGGTACCAGCGCTGCTGTGAAACCTGTAGGGACTTTTATGCCAAGAAAATACTGCACAAGAGCTAATGACCAAATGCACCTACTTGTCCTCTACATAACActcttttttgtaaatgtttttaatattgttAAATGTTAAGAAAGTATAATGGTAAGAAAACCATTTCTACTGTTGATGGaactttttgtatttaaaaaaagaaaatggcaagtacacataaatgtacattttaaatgagctcATAAACTTCTAGATTTGATGAAAA

Function

GO: NA

KEGG:

id description
K08631 ADAMTS17; a disintegrin and metalloproteinase with thrombospondin motifs 17

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35205 lncRNA upstream 42783 9333230 ~ 9348325 (+) True cers3a
TU35185 lncRNA upstream 90901 9299488 ~ 9300207 (+) True G26297
TU35161 lncRNA upstream 146655 9240665 ~ 9244453 (+) True G26276
TU35158 lncRNA upstream 152543 9236352 ~ 9238565 (+) True G26273
TU35098 lncRNA upstream 570124 8820753 ~ 8820984 (+) True G26218
TU35243 lncRNA downstream 2281 9606743 ~ 9608997 (+) True G26347
TU35268 lncRNA downstream 49122 9653584 ~ 9655329 (+) False asb7
TU35279 lncRNA downstream 117761 9722223 ~ 9722683 (+) True G26367
TU35280 lncRNA downstream 122730 9727192 ~ 9727740 (+) True G26368
TU35303 lncRNA downstream 141675 9746137 ~ 9791753 (+) True G26386
XM_039795961.1 mRNA upstream 12497 9333229 ~ 9378611 (+) False cers3a
XM_039795962.1 mRNA upstream 12497 9333229 ~ 9378611 (+) False cers3a
XM_039796102.1 mRNA upstream 94391 9261211 ~ 9296717 (+) True LOC120556464
XM_039795212.1 mRNA upstream 299598 9056333 ~ 9091510 (+) True abhd17c
XM_039794377.1 mRNA upstream 640228 8745162 ~ 8750880 (+) True mesd
XM_039794581.1 mRNA downstream 27545 9632007 ~ 9642958 (+) True lins1
XM_039794583.1 mRNA downstream 27545 9632007 ~ 9642958 (+) False lins1
XM_039794585.1 mRNA downstream 49116 9653578 ~ 9677027 (+) False asb7
XM_039794586.1 mRNA downstream 50151 9654613 ~ 9677027 (+) False asb7
XM_039794584.1 mRNA downstream 54937 9659399 ~ 9677027 (+) True asb7
TU35121 other upstream 235765 9068729 ~ 9155343 (+) True G26236
TU35083 other upstream 630807 8753701 ~ 8760301 (+) True G26205
TU34538 other upstream 3101332 6288190 ~ 6289776 (+) False LOC120555541
TU34541 other upstream 3101332 6289056 ~ 6289776 (+) False LOC120555541
TU34546 other upstream 3103031 6287048 ~ 6288077 (+) True G25743
TU35313 other downstream 242815 9847277 ~ 9860000 (+) True aldh1a3
XR_005638880.1 other downstream 2427159 12031621 ~ 12031728 (+) True LOC120556595
TU36106 other downstream 3505295 13109757 ~ 13110339 (+) True G27086
TU36145 other downstream 3630773 13235235 ~ 13237819 (+) True LOC120556202
TU36647 other downstream 5837015 15441477 ~ 15446392 (+) False LOC120556433

Expression Profile