RNA id: XM_039794586.1


Basic Information

Item Value
RNA id XM_039794586.1
length 3035
RNA type mRNA
GC content 0.45
exon number 4
gene id asb7
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 9653578 ~ 9677027 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAAAACCATTTGAAGACAGAGTGCTGTCTCCTCTCTCACAGTGCAGCTGTGTATTTACAGGTGCAGCTTCGATATGACTAAGAGAAGCCCATCTCTTCAGCTTGTCAAAAGAGGTACAGATGAACATTCCCATTCCGAAATGTGACAGGATGCTGAACCATCACTGCAGAAGGAACCCTGAGCTTCATGAGGAGCTGCAGATCCAGGCTGCAGTGGCAGCTGGGGATGTCTGCACCGTCAGGAGAATGCTGGAGCAAGGATACTCCCCTAAGATCCGCGATGCTAACGGCTGGACACTGCTCCACTTCTCCGCCGCCAAAGGAAAAGAGAGATGTGTTCGAGTCTTTCTTGAGCATGGAGCTGACCCCACAGTGAAGGACTTTATCGGTGGCTTCACAGCACTTCACTATGCCGCTATGCATGGCAGAGCGCGCATCGCCCGACTCATGCTGGAATCGGAGTTTCGCAGTGACATTATAAACGCAAAAAGCAACGATGGCTGGACGCCACTGCACGTGGCCGCCCACTACGGCCGCGACTCGTTTGTACGCCTCCTCCTCGAGTTCAGGGCCGAGGTGGACCCGTTGAGTGACAAAGGGACCACACCACTACAGTTGGCCATCATCCGTGAGCGCTCCAGCTGTGTACGGATCCTACTGGACCACAGTGCCAACATTGACATTCAAAACGGCTTCCTGTTGCGATACGCCGTCATCAAAGGCAATCACTCGTACTGTCGCATGTTCCTGCAGAGGGGAGCGGACACTAATCTCGGACGTCTTGAAGATGGCCAGACCCCCTTGCACCTGTCTGCCCTCAGGGACGATGTGCTGTGCGCCGAGATGCTCTACACATACGGGGCTGATACCAACACCAGGAACTACGAGGGCCAGACACCGGTAGCTGTATCTGTTAGCATGTCTGAGATCAGCCGGCCTTGTCTGGACTTCCTACAGGAAATCACCAGACAACCTCGGACTCTACAAGACTTGTGTCGAATAAAAATCCGTCACTGCATTGGCCTTCAAAGTTTGAAATTGTTGGAGGATCTACCGATTGCAAAGGTTATGAAAGATTATTTAAAACACAAGTTTGACAATGTTTGAAGGCAACAACAATAGAAAAGGAGAGGGTGACTAAAACTCTCTGCTATCATTTATAAAGACTATGCAATCACTATGCTCTTCGCTGGAAGGAATGTCCACAGGTCTGTTGTGTACATACTGAAGGAAGGAAAGTTAGTCCAGTTTGGTCATCCAGAGATTTCTGCCCGCTTTCCATTTCAGCCTTTTTACAGTTCAAACAGTGGCTGAAGAATGGAAATGGACCCACCTTGTAAGCTAAGGTAATGGGTTattttggaaaaaagaaaacctcATTTGACAGATAGCATTGTTACTACAGTTAGCATTATAAACATTTATGTTGTCACTGTAAACATGTGCATGATGTTATCCTCGCTGTGTCTGATTGTCATCAAGTGCATACTTGCCAATGAGTCTTTTTATACTATTATAGGCTAAACTCAAATTGCAGCAGTGATGAtgattttctttctgtctcaaAATTGGCAAAGTGTTGAGCTACTTGACAAATGACAAGGTACACTCTCTGATTTTGTTTCATCACCCAATAGTGACTCTACTTCCCATAATAGCCTGGTTCCAAACCTCTGATTCACTACCAACATCTCCAATTGTTCAGCCTTTTTAAGCAAATAGCACTCGTGTTGTGCCCCTTttcggggtggggggggatcAACTTTTTCTCCAGTGCGTAAATGGGGCGTGCTTCAGTGAACCTAAGTCTTACAATCCTTACAGTACATCTTGCTTGTTTAATGTAATGATACTGTGATGCTGTGTGCAGGTTAAACTAATTAATCTGTACACATTTTAACAATTGAGTTCTCAAATTACCTGACGGATAAATCAAATCCATTATGGGGCATGTACCACACAACAACCTTTGTagtcaggggtcaccaacaatGTATTCTAGAGCAAAACTGCCAGCaagtcagaaacaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaatgctgtACCAAAACCAAAGACATGCCAGGTAGGCAGATGTGTCGTTATGCAGCATCTAGGCCCCTTCCTGACTAACATTAAACCACccaataatataatttttttatgaaaattgtctaatagaaaaataaatcaacattcCACATCATCTCATTCAACATTGTGACGATGGCCAGCTTTTACCAAGGACGTTACAAATTGAGTAGGGTCAAAGACTGTAACGTAACTTGTAACCTGGAGACTTTGACAATTAGCAAGCATGCCTATTAACGCGTTTGGGACATTTGTTAATTTGTCAGCCCCTTGCTGTCAACACGGGTACCCCTACAAAATTCGGAACCGATTCAAATCCGCATTAATATCCGGCAAGGACCATGTACGACAGACATCGTTCTGCTCCGAGTCTCTGTGCTCGAGCTACGATTTTTCAAAGTTCCGGAATAGGAATGGTCAgggaaaatctttttttaaacttgtcaAAGCTCTGATTTTGTAATATGTTGTTGCCACCCCCAAATGGGGTGTTTCCATCTTTGTTCGGACCCTCTAGCACCATTGCTGGCAGCATAAAACTCCCCACAGGGTCACAGTGACAAATGGGAACACTGCTTATgccaaatgtcaaacttttaGGCTCAGTTCCTTATATTCTGAAATTTGGCATACTTTTGAATTGAGTGGTCAGTGTTCCTGTTTGGACAGCCTGCCGTGCCAAAAATGCGACAGAATGTCACAGTGACCAACGGTCACATTTTTAACATGGACTTTCAAAAAATAGTCCATGTAGTCATGTGTCCAATATTGTTTCTGTAAATTATGAACGTTAGTTCAAGTAAATATGCAGAGACCACTGTTattaaaactgtaaatgtatTCACAGAACCACAAAGCAAACCTTTTGAAAACCATACTAAAAGGGCACTCCCCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35243 lncRNA upstream 45616 9606743 ~ 9608997 (+) True G26347
TU35228 lncRNA upstream 181513 9460917 ~ 9473100 (+) True G26335
TU35205 lncRNA upstream 306288 9333230 ~ 9348325 (+) True cers3a
TU35185 lncRNA upstream 354406 9299488 ~ 9300207 (+) True G26297
TU35161 lncRNA upstream 410160 9240665 ~ 9244453 (+) True G26276
TU35279 lncRNA downstream 45196 9722223 ~ 9722683 (+) True G26367
TU35280 lncRNA downstream 50165 9727192 ~ 9727740 (+) True G26368
TU35303 lncRNA downstream 69110 9746137 ~ 9791753 (+) True G26386
TU35308 lncRNA downstream 116942 9793969 ~ 9794192 (+) True G26391
TU35377 lncRNA downstream 420272 10097299 ~ 10099084 (+) True G26453
XM_039794581.1 mRNA upstream 11655 9632007 ~ 9642958 (+) True lins1
XM_039794583.1 mRNA upstream 11655 9632007 ~ 9642958 (+) False lins1
XM_039795147.1 mRNA upstream 50151 9391108 ~ 9604462 (+) True adamts17
XM_039795961.1 mRNA upstream 276002 9333229 ~ 9378611 (+) False cers3a
XM_039795993.1 mRNA downstream 137670 9814697 ~ 9858684 (+) False aldh1a3
XM_039794699.1 mRNA downstream 184125 9861152 ~ 10096639 (+) False lrrk1
XM_039794701.1 mRNA downstream 184125 9861152 ~ 10096639 (+) False lrrk1
XM_039794700.1 mRNA downstream 198765 9875792 ~ 10096639 (+) True lrrk1
XM_039794702.1 mRNA downstream 222897 9899924 ~ 10096639 (+) False lrrk1
TU35242 other upstream 50177 9566831 ~ 9604436 (+) False adamts17
TU35121 other upstream 499270 9068729 ~ 9155343 (+) True G26236
TU35083 other upstream 894312 8753701 ~ 8760301 (+) True G26205
TU34538 other upstream 3364837 6288190 ~ 6289776 (+) False LOC120555541
TU35313 other downstream 170250 9847277 ~ 9860000 (+) True aldh1a3
XR_005638880.1 other downstream 2354594 12031621 ~ 12031728 (+) True LOC120556595
TU36106 other downstream 3432730 13109757 ~ 13110339 (+) True G27086
TU36145 other downstream 3558208 13235235 ~ 13237819 (+) True LOC120556202
TU36647 other downstream 5764450 15441477 ~ 15446392 (+) False LOC120556433

Expression Profile