RNA id: TU35279


Basic Information

Item Value
RNA id TU35279
length 461
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G26367
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 9722223 ~ 9722683 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aatcactccagtcctaaaacaactccactggcttcccatttcccaccggatcacctacaaaatcctggtcctcacctataaagccctccaccatctggccccctcatacctcactgacctcctctccccttaccaaccctcacggtccctcagatccacctcagccggtctcctctccatccaaaagtccaacctgcgctgttttggggacagagccttctccagagcagctcccaggctctggaactccctcccccaagagatccgcacctctgagtccctcaccatcttccagtcccgcctcaagacccatctcttcacctcagcctacccatagtccacctgcccccctccctttttcatctgtatcttgttttgttctacttgttttgttatgtttttataatctaccctgccctgtaaagcgactttgagtccatgaaaagcgctatataaattca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35268 lncRNA upstream 66894 9653584 ~ 9655329 (+) False asb7
TU35243 lncRNA upstream 113226 9606743 ~ 9608997 (+) True G26347
TU35228 lncRNA upstream 249123 9460917 ~ 9473100 (+) True G26335
TU35205 lncRNA upstream 373898 9333230 ~ 9348325 (+) True cers3a
TU35185 lncRNA upstream 422016 9299488 ~ 9300207 (+) True G26297
TU35280 lncRNA downstream 4509 9727192 ~ 9727740 (+) True G26368
TU35303 lncRNA downstream 23454 9746137 ~ 9791753 (+) True G26386
TU35308 lncRNA downstream 71286 9793969 ~ 9794192 (+) True G26391
TU35377 lncRNA downstream 374616 10097299 ~ 10099084 (+) True G26453
TU35375 lncRNA downstream 376700 10099383 ~ 10101304 (+) True G26452
XM_039794585.1 mRNA upstream 45196 9653578 ~ 9677027 (+) False asb7
XM_039794586.1 mRNA upstream 45196 9654613 ~ 9677027 (+) False asb7
XM_039794584.1 mRNA upstream 45196 9659399 ~ 9677027 (+) True asb7
XM_039794581.1 mRNA upstream 79265 9632007 ~ 9642958 (+) True lins1
XM_039794583.1 mRNA upstream 79265 9632007 ~ 9642958 (+) False lins1
XM_039795993.1 mRNA downstream 92014 9814697 ~ 9858684 (+) False aldh1a3
XM_039794699.1 mRNA downstream 138469 9861152 ~ 10096639 (+) False lrrk1
XM_039794701.1 mRNA downstream 138469 9861152 ~ 10096639 (+) False lrrk1
XM_039794700.1 mRNA downstream 153109 9875792 ~ 10096639 (+) True lrrk1
XM_039794702.1 mRNA downstream 177241 9899924 ~ 10096639 (+) False lrrk1
TU35242 other upstream 117787 9566831 ~ 9604436 (+) False adamts17
TU35121 other upstream 566880 9068729 ~ 9155343 (+) True G26236
TU35083 other upstream 961922 8753701 ~ 8760301 (+) True G26205
TU34538 other upstream 3432447 6288190 ~ 6289776 (+) False LOC120555541
TU35313 other downstream 124594 9847277 ~ 9860000 (+) True aldh1a3
XR_005638880.1 other downstream 2308938 12031621 ~ 12031728 (+) True LOC120556595
TU36106 other downstream 3387074 13109757 ~ 13110339 (+) True G27086
TU36145 other downstream 3512552 13235235 ~ 13237819 (+) True LOC120556202
TU36647 other downstream 5718794 15441477 ~ 15446392 (+) False LOC120556433

Expression Profile