RNA id: TU35303


Basic Information

Item Value
RNA id TU35303
length 332
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G26386
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 9746137 ~ 9791753 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

attcatgaaaaaaaagcagaaaaaaatattgatatatgatgatttaataacagtttttgtgtgcgtggacatttttgcctcgaaggtgtccagagggtacaaaatgaataatttaagtataaaagacatgtaagagtaaaaaacactggatttaaaaaatttgactgaaaagaaggattcctacaaaatttcatgccataagaagtaacacagcaaaaatgatcacaaaatgaaaaaaaaaacttgagaaaaatgtacaaaaatgaccgaagagggcatgagggttaactttgtagggggcgctagcgagccatttttgtgcgcctattccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35280 lncRNA upstream 18397 9727192 ~ 9727740 (+) True G26368
TU35279 lncRNA upstream 23454 9722223 ~ 9722683 (+) True G26367
TU35268 lncRNA upstream 90808 9653584 ~ 9655329 (+) False asb7
TU35243 lncRNA upstream 137140 9606743 ~ 9608997 (+) True G26347
TU35228 lncRNA upstream 273037 9460917 ~ 9473100 (+) True G26335
TU35308 lncRNA downstream 2216 9793969 ~ 9794192 (+) True G26391
TU35377 lncRNA downstream 305546 10097299 ~ 10099084 (+) True G26453
TU35375 lncRNA downstream 307630 10099383 ~ 10101304 (+) True G26452
TU35376 lncRNA downstream 308579 10100332 ~ 10101417 (+) False G26452
TU35380 lncRNA downstream 322160 10113913 ~ 10114187 (+) True G26456
XM_039794585.1 mRNA upstream 69110 9653578 ~ 9677027 (+) False asb7
XM_039794586.1 mRNA upstream 69110 9654613 ~ 9677027 (+) False asb7
XM_039794584.1 mRNA upstream 69110 9659399 ~ 9677027 (+) True asb7
XM_039794581.1 mRNA upstream 103179 9632007 ~ 9642958 (+) True lins1
XM_039795993.1 mRNA downstream 22944 9814697 ~ 9858684 (+) False aldh1a3
XM_039794699.1 mRNA downstream 69399 9861152 ~ 10096639 (+) False lrrk1
XM_039794701.1 mRNA downstream 69399 9861152 ~ 10096639 (+) False lrrk1
XM_039794700.1 mRNA downstream 84039 9875792 ~ 10096639 (+) True lrrk1
XM_039794702.1 mRNA downstream 108171 9899924 ~ 10096639 (+) False lrrk1
TU35242 other upstream 141701 9566831 ~ 9604436 (+) False adamts17
TU35121 other upstream 590794 9068729 ~ 9155343 (+) True G26236
TU35083 other upstream 985836 8753701 ~ 8760301 (+) True G26205
TU34538 other upstream 3456361 6288190 ~ 6289776 (+) False LOC120555541
TU35313 other downstream 55524 9847277 ~ 9860000 (+) True aldh1a3
XR_005638880.1 other downstream 2239868 12031621 ~ 12031728 (+) True LOC120556595
TU36106 other downstream 3318004 13109757 ~ 13110339 (+) True G27086
TU36145 other downstream 3443482 13235235 ~ 13237819 (+) True LOC120556202
TU36647 other downstream 5649724 15441477 ~ 15446392 (+) False LOC120556433

Expression Profile