RNA id: XM_039795993.1


Basic Information

Item Value
RNA id XM_039795993.1
length 2678
RNA type mRNA
GC content 0.46
exon number 13
gene id aldh1a3
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 9814697 ~ 9860000 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGCCAGTATATGGGCTGGCAGTATTTAGACGACGGAGCAGACAGACTGGCCCTGGACTGTACTGCGGACCCAGAATGGCACAGAATGGAACAACAGAGAACGGAGTGGCTGAAGGGATCTCAGCTTTGCCTTTTCCTCAACCTGTCAAAGTCCAGGAGATCAGACACACCAAGATTTTTATCAACAATGAATGGCACACATCCAGCAGCGGAAAGACATTTCCAACTTTCAACCCAGCGACAGGTGTCAAAATCTGTGATGTGGAAGAAGCAGACAAAGAAGATGTGGACAGGGCAGTGGGGGCAGCCAAGGCGGCCGGGCAGAGAGGCTCTCCGTGGCGGAGAATGGATACGTCCAGCCGCGGAATGCTGCTGCACAAACTGGCCGACCTGATGGAGAGGGACCGGCTGCTGCTGGCGACCCTGGAGACTCTGGACACGGGGAAGCCTTTCCTGCAGTCCTTCTTCATTGACCTGGACGGCAGTATCAAAACCCTTCGTTACTATGCAGGCTGGGCGGACAAGATCCATGGCAAGAGTCTGCCtgtagATGAAAGCTTCATGTGTTTAACCAGACATGAGCCTGTTGGCGTATGTGGAGCTATCATTCCATGGAACTTTCCTCTGCTGATGTTCATGTGGAAGATGGCGCCGGCCCTGAGCTGTGGAAACACTGTGGTTATCAAGCCAGCAGAGCAGACCCCCCTCACAGCCCTCCACGTTGGATCGCTCATCAAAGAGGCAGGGTTCCCTCTTGGAGTTGTGAACATCGTTCCGGGGTTTGGTCCCACAGCAGGAGCAGCCATCGCCAGCCACATGGACATCAACAAAGTGGCCTTCACTGGCTCTACAgagGTCGGCCAACTGATCAAAGAGGCATCAGCCAAAAGTAATCTGAAGAGAGTGACTCTGGAGCTGGGAGGGAAGAACCCCTGCATTGTGTTTGCTGACTGTGACTtgCAGCTGGCTGTGGAGGAAACTCAGAAAGGAGCTTTATATAACCAGGGTCAGTGCTGCACTGCTGCTTCACGTGTCTTTGTGGAGGAAAGTATTTATGAGGAGTTTGTGCGCCGCAGCATAGAAAACGTCAAGAAGATTGTCATAGGAGACCCGCTGGACCCCCAGACATCACACGGGCCACAGATTGACCGACAGCACTTTGACAAGATTATGGACCTGATAAAGAGTGGGAAGGAGGAGGGAGCCAGGCTGGAGTATGGAGGAGCAGCTTTGGGCGAGAAGGGCCTCTTCATTAAACCCACCATTTTCTCTGGGGTCAAAGACCACATGCGCATCGCCAAGGAAGAGATCTTTGGTCCAGTGCAGTGTATATTCAGCTTTAAAAGCCCGCAGGAGGCCATAGAGAGAGCAAACAGCTTACAATATGGCCTGGTGTCAGCAGTCTTCACAACAAGTATGGACAGagctctgtctgtgtctgcagcCCTGGAGACTGGCACTGTCTGgATAAACTGCTATAATGCCCTTCATGCCCAGACTCCCTTTGGAGGGTATAAGATGTCAGGCAACGGACGAGAGCTCGGAGAGTATGCTCTGGCTGAATACTCAGAGGTAAAAGCAGTGACCATCAAACTGAGTGAAACTCTGTGAGAAGAACTGGCTAAGATGTCCAGCGCTCTGCACTGCCCATTACATCACAACTTTCTCCAATGCACACGCTCCCTTATTTGTCTTTAGTCATGCTCTTGATGTTGAGTTAGGGTTAGGCCAATATGTCAGTTTGTTTATATGGTATATCAGAGCCCAGCAAGAGTCAGCATTTTTGTTCACCTTTTATTTGATATGCTGTAGGTGACGATAGGCTTCAGTGACGATAGGCTTCAGTGATGACCGTATACAAAACTGCTAATGCTTTATTTACaggttttatttttctaataatTTTCCAATAATTTATTCAGAAGTTCCCCCCGACATAAGTATGTGAATTGGTACTACAGTAATATTGGGAAAATAGAGACAGTGCTCAGTTGGTACATTTACACAAATAACTGACTTAACTCAGAGCATAGCAGTTCAGCTGAACATgcacaactgtaaaatgtatctACAGTCAATGATGAATAAAGTttccaataataaataaaaaatgaatgaatatttacTTTGGTTTAAATGGGGCAGTTCTTTCAATGGAATTCCAATTTTACATATGATTAGTACCAAGCAACAGAGCAAAATCAAAATTACAAAAGCACTGATATGTTTGTTTGACAAAGAAAAGGATTTCACTTAATGGAGCATTTTTAGAGCTTTCAGCAACATCTCGAGGCCTTCATCAGTGGGGGAGTTTGCTCACTTGTTATGAAGATGGTTTAGTTGTCATCACATGGCCTAAGTTTTGTATATGGGGTTTGATGGGAACCCATGTCTCTGTTTAAAGGTGGTCTCTGGTATCAGATGTTCTTCACTGCGGTGTCTGTTTCTGTTCATTCAATCTTTTGTCGAGGGTCCTTGCTCTTTCTGATGCAGGGGCGATTACAGGATTTTTTAAGTGTTGTGGCATGGGGGGGCAATAATCAGGGGGAGAATACAGCAAAGAAAATCTGCTTATAGAAATATAAGAAATATTGGACAAGATAGAAgaacacaatgtaattctgctaaatagaACAtgacattcattattaatttcacttgttttcattttaaacaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35308 lncRNA upstream 20505 9793969 ~ 9794192 (+) True G26391
TU35303 lncRNA upstream 22944 9746137 ~ 9791753 (+) True G26386
TU35280 lncRNA upstream 86957 9727192 ~ 9727740 (+) True G26368
TU35279 lncRNA upstream 92014 9722223 ~ 9722683 (+) True G26367
TU35268 lncRNA upstream 159368 9653584 ~ 9655329 (+) False asb7
TU35377 lncRNA downstream 238615 10097299 ~ 10099084 (+) True G26453
TU35375 lncRNA downstream 240699 10099383 ~ 10101304 (+) True G26452
TU35376 lncRNA downstream 241648 10100332 ~ 10101417 (+) False G26452
TU35380 lncRNA downstream 255229 10113913 ~ 10114187 (+) True G26456
TU35381 lncRNA downstream 259402 10118086 ~ 10118347 (+) True G26457
XM_039794585.1 mRNA upstream 137670 9653578 ~ 9677027 (+) False asb7
XM_039794586.1 mRNA upstream 137670 9654613 ~ 9677027 (+) False asb7
XM_039794584.1 mRNA upstream 137670 9659399 ~ 9677027 (+) True asb7
XM_039794581.1 mRNA upstream 171739 9632007 ~ 9642958 (+) True lins1
XM_039794583.1 mRNA upstream 171739 9632007 ~ 9642958 (+) False lins1
XM_039794699.1 mRNA downstream 2468 9861152 ~ 10096639 (+) False lrrk1
XM_039794701.1 mRNA downstream 2468 9861152 ~ 10096639 (+) False lrrk1
XM_039794700.1 mRNA downstream 17108 9875792 ~ 10096639 (+) True lrrk1
XM_039794702.1 mRNA downstream 41240 9899924 ~ 10096639 (+) False lrrk1
XM_039795154.1 mRNA downstream 566479 10425163 ~ 10465554 (+) True LOC120555943
TU35242 other upstream 210261 9566831 ~ 9604436 (+) False adamts17
TU35121 other upstream 659354 9068729 ~ 9155343 (+) True G26236
TU35083 other upstream 1054396 8753701 ~ 8760301 (+) True G26205
TU34538 other upstream 3524921 6288190 ~ 6289776 (+) False LOC120555541
XR_005638880.1 other downstream 2172937 12031621 ~ 12031728 (+) True LOC120556595
TU36106 other downstream 3251073 13109757 ~ 13110339 (+) True G27086
TU36145 other downstream 3376551 13235235 ~ 13237819 (+) True LOC120556202
TU36647 other downstream 5582793 15441477 ~ 15446392 (+) False LOC120556433
TU36678 other downstream 5616480 15475164 ~ 15486421 (+) False LOC120556001

Expression Profile