RNA id: TU35376


Basic Information

Item Value
RNA id TU35376
length 1086
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G26452
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 10099383 ~ 10101417 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggtttaattttcaaaaaacactatatttttgttgtactgcacattgctgcagctcctcttttcactttgtgtgttgagctctctgttttagctacagagtgaggcatcacacttctatcccatctttgttgggagtcgcacatgcgcagtaggtAATTactgcgcagtagctaggtactAGTGGTTAGCGTTGCTAGcagttagccacctcgttctcaatggcaaaacactgctacaacacacacgagttcaccctaatctgcaaaagaaattgtatagaactattTACATGTCCCttgtctgcaggtattccacgcatagttggaagtgcgcccttgtttagaagaagtctcccggctaatcctgccttgtactgactgaagttggagaaacagctagctgatgtggtattagctaaagtggttaggacacaccaaatgtttcggccGATGACGTAGACGGCCCTGctgattttgaccagctcacccggagactgaaggcaggatacatttgaaggcaggatacattcagaaacccgtatctcattcaaaacagcatggatttttttttccaagtttgtatgcgtatggaagcaccagagacacaaaataacaccccaaatcccagaaaaagtgattttttcataatatgggcactttaagatttACACTTTGACACTTTTTGACTGGCTAGATGGACGGCGACGGGAAAAACCAACAGCTACAGTGAAAACAgttaaaacctttctttttagtaaactctgtctacacaaacaatgttctcaatgctcaaGTTCATGTGTAGACCCCCTGTTGATACTtagagcaaagtttcatgttgtgtcgagccttcttagtgttttaaaaatagcgattatgatgctatcatagtagtgcccctagcactaccattcaaaaggccatttgaccaaaaACGAGAATttggtaaatcttaaaagtggcctttccgtcctaattatgcttttaaacgaaagtttgactctggtatattcacaaaaagaccctaggttgcattttggcttGAGTTACGCTTTAAATCGACACATTTGCATTTCTACAGTGCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35377 lncRNA upstream 1248 10097299 ~ 10099084 (+) True G26453
TU35308 lncRNA upstream 306140 9793969 ~ 9794192 (+) True G26391
TU35303 lncRNA upstream 308579 9746137 ~ 9791753 (+) True G26386
TU35280 lncRNA upstream 372592 9727192 ~ 9727740 (+) True G26368
TU35279 lncRNA upstream 377649 9722223 ~ 9722683 (+) True G26367
TU35380 lncRNA downstream 12496 10113913 ~ 10114187 (+) True G26456
TU35381 lncRNA downstream 16669 10118086 ~ 10118347 (+) True G26457
TU35382 lncRNA downstream 19184 10120601 ~ 10120852 (+) True G26458
TU35384 lncRNA downstream 20512 10121929 ~ 10122337 (+) True G26460
TU35388 lncRNA downstream 23116 10124533 ~ 10124762 (+) True G26464
XM_039794699.1 mRNA upstream 3693 9861152 ~ 10096639 (+) False lrrk1
XM_039794701.1 mRNA upstream 3693 9861152 ~ 10096639 (+) False lrrk1
XM_039794700.1 mRNA upstream 3693 9875792 ~ 10096639 (+) True lrrk1
XM_039794702.1 mRNA upstream 3693 9899924 ~ 10096639 (+) False lrrk1
XM_039795993.1 mRNA upstream 241648 9814697 ~ 9858684 (+) False aldh1a3
XM_039795154.1 mRNA downstream 323746 10425163 ~ 10465554 (+) True LOC120555943
XM_039795167.1 mRNA downstream 383046 10484463 ~ 10485311 (+) True LOC120555947
XM_039795168.1 mRNA downstream 426421 10527838 ~ 10609081 (+) True LOC120555948
XM_039795169.1 mRNA downstream 640293 10741710 ~ 10745326 (+) True LOC120555949
XM_039795093.1 mRNA downstream 688428 10789845 ~ 10840149 (+) False shcbp1
TU35313 other upstream 240332 9847277 ~ 9860000 (+) True aldh1a3
TU35242 other upstream 495896 9566831 ~ 9604436 (+) False adamts17
TU35121 other upstream 944989 9068729 ~ 9155343 (+) True G26236
TU35083 other upstream 1340031 8753701 ~ 8760301 (+) True G26205
TU34541 other upstream 3810556 6289056 ~ 6289776 (+) False LOC120555541
XR_005638880.1 other downstream 1930204 12031621 ~ 12031728 (+) True LOC120556595
TU36106 other downstream 3008340 13109757 ~ 13110339 (+) True G27086
TU36145 other downstream 3133818 13235235 ~ 13237819 (+) True LOC120556202
TU36647 other downstream 5340060 15441477 ~ 15446392 (+) False LOC120556433
TU36678 other downstream 5373747 15475164 ~ 15486421 (+) False LOC120556001

Expression Profile