RNA id: TU35377


Basic Information

Item Value
RNA id TU35377
length 1786
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G26453
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 10097299 ~ 10099084 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtagacctttggtatcatttcgggcattattagtggggtaatgttaagagacacttcggatccattagcctctgcgctaagctattcagcggctaacgctactctacgctaactctcccaatgttagacccaggtgaaaaaagcttctgggggggtgtttggctcgaggtcatggtgcaaaggaccctagggtgaaattactctgaaccatcactttaaaggacaagtattttctttccttttttttaaattaattggtGTTGGAGTTTAAATTGTTCTGCTGGGAAACAGCTGTGCTCTAGAAACAACAGCAGGTTGTTGATGTGTGTTTGGCAGTGACACTGACTCAGAACAAAGTGTTCCTCTCTTTAACTGTGTCGTATGAATCTGTATGCCAGCCGCAACTCCCATTGTTACCAGAGTTGCCTGCAAGCAACACACTAACACGTGTGTTCTGTGCAAGCATTATGCAACGGACCAGTGGTTCCCAGCTTTTGCCATCTAACCTAATGCTTTGGCAGGTTCTTATAGATAaaagacttattttatttttttaaatgaagcttTAAATCAAGGCTTTAAATCAAGACACATTGTGTTCCTTGCTCAACTCTGCACCTCTAATCTGTATACAGTAAAATAGAAAATCATCTGAAACATGTTCTTTGTGTTTTACTTCTCTATTAGGGcgttgtttttattgttactGGTCGTTGTATACAGCACGTATTGGACATGATGCACAAGACAGAAGCCGGTGCATGTGCACATTTTACATAATGTAGAAGACAACATTGCATCATTGATTAAGTTTGTAGGGCATTGCTTCCATAGTCTTCTTTATTAAAACAACCCGCtgtgatttttgtttggctgCCTAAATGGGTACACCAGCAGCATTGTTTACTATGGTACCAGAGGCTTAAAATTATTGCATTTTGAGGTACATGAGTCATAACCACGAGAACAAATACAAACGCGTATCAAAACAACTTTTTGACACGCCTACAAATCTACCCACAAGCTGATGTGCTGCATGGAAGGGGTACGTGTCCGTAATCCATCAGTCTGACAATGTTTGTAATAGCCTACAATTAATATAAAGAAATAACTGGTCTTATTGCAAGACTTAAACACAGAATTGCTCCACCTTCGAGTCGCTGTCTGTGGCTGtggcgggagagagagagacagactatAACCAACTACTAATTGTAAAATGGTCAAATTATTCAACATTATAACACTTTGGGCACTATTGATTATATACAGAGGGCAAAATTATTGctcaaatacaataaatattgtATATCTGGCAACGCTGTATACCAGTTCTTATTCTGTTGTATCGTTGACAGAGTAGCTGCTCAAAGAGCGTTTGCTGCCCCCAGTGGTCATCACACTTGTCATTTCAAACTGACCTCCACCAGTTAGCACAGGTGTCACCAAATCAGCCAAACTGAAATCAGATCCCGATAGGCTTTTATAGTGTGCCAATAGCTTCCCATGGGTAAAATACTTTTGTCTTAGTTCAAATGACAGAGTACTTAAATGTTACTAACCCTCACTGATACCAGTCCAGGCTAGTCTCTTGACAGAAAACGCCACCAACACTGATAAAAGAAGTTATAGTGACCAGTGGAGCGAAGGCTTTCTACAATAGGGGGGTGACTTTGCCGCTCTATAGGCTAGTTCTATGTGTTGTGACAGTGCTGTCACCAAATGATCGAAAACCCCTGAGAGCCGGGCTTTGACTGAAGTGTTTGCTTAACCCTTGTGCttagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35308 lncRNA upstream 303107 9793969 ~ 9794192 (+) True G26391
TU35303 lncRNA upstream 305546 9746137 ~ 9791753 (+) True G26386
TU35280 lncRNA upstream 369559 9727192 ~ 9727740 (+) True G26368
TU35279 lncRNA upstream 374616 9722223 ~ 9722683 (+) True G26367
TU35268 lncRNA upstream 441970 9653584 ~ 9655329 (+) False asb7
TU35375 lncRNA downstream 299 10099383 ~ 10101304 (+) True G26452
TU35376 lncRNA downstream 1248 10100332 ~ 10101417 (+) False G26452
TU35380 lncRNA downstream 14829 10113913 ~ 10114187 (+) True G26456
TU35381 lncRNA downstream 19002 10118086 ~ 10118347 (+) True G26457
TU35382 lncRNA downstream 21517 10120601 ~ 10120852 (+) True G26458
XM_039794699.1 mRNA upstream 660 9861152 ~ 10096639 (+) False lrrk1
XM_039794701.1 mRNA upstream 660 9861152 ~ 10096639 (+) False lrrk1
XM_039794700.1 mRNA upstream 660 9875792 ~ 10096639 (+) True lrrk1
XM_039794702.1 mRNA upstream 660 9899924 ~ 10096639 (+) False lrrk1
XM_039795993.1 mRNA upstream 238615 9814697 ~ 9858684 (+) False aldh1a3
XM_039795154.1 mRNA downstream 326079 10425163 ~ 10465554 (+) True LOC120555943
XM_039795167.1 mRNA downstream 385379 10484463 ~ 10485311 (+) True LOC120555947
XM_039795168.1 mRNA downstream 428754 10527838 ~ 10609081 (+) True LOC120555948
XM_039795169.1 mRNA downstream 642626 10741710 ~ 10745326 (+) True LOC120555949
XM_039795093.1 mRNA downstream 690761 10789845 ~ 10840149 (+) False shcbp1
TU35313 other upstream 237299 9847277 ~ 9860000 (+) True aldh1a3
TU35242 other upstream 492863 9566831 ~ 9604436 (+) False adamts17
TU35121 other upstream 941956 9068729 ~ 9155343 (+) True G26236
TU35083 other upstream 1336998 8753701 ~ 8760301 (+) True G26205
TU34538 other upstream 3807523 6288190 ~ 6289776 (+) False LOC120555541
XR_005638880.1 other downstream 1932537 12031621 ~ 12031728 (+) True LOC120556595
TU36106 other downstream 3010673 13109757 ~ 13110339 (+) True G27086
TU36145 other downstream 3136151 13235235 ~ 13237819 (+) True LOC120556202
TU36647 other downstream 5342393 15441477 ~ 15446392 (+) False LOC120556433
TU36678 other downstream 5376080 15475164 ~ 15486421 (+) False LOC120556001

Expression Profile