RNA id: TU35381


Basic Information

Item Value
RNA id TU35381
length 262
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G26457
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 10118086 ~ 10118347 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgattcatcataaaGCAGAATGTGGCCGTCAGATcggcacacagaaaaagagtcaCCTTATTGAATGGCACTGGCACTCCAGCTGACTGAAAGGCCAGATGCAAATGTTCACTCTTCAGGCCTTGGAAGTAATATTATCACCATAGGGCAGCTGTGATAGAGTGGTTGTCTGCCAATAGGAAGGTTGGTGttttgatccctggccctgcagtcccatgtcaaagtgtccttgggcaagacactgaaccccgagttgacGCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35380 lncRNA upstream 3899 10113913 ~ 10114187 (+) True G26456
TU35376 lncRNA upstream 16669 10100332 ~ 10101417 (+) False G26452
TU35375 lncRNA upstream 16782 10099383 ~ 10101304 (+) True G26452
TU35377 lncRNA upstream 19002 10097299 ~ 10099084 (+) True G26453
TU35308 lncRNA upstream 323894 9793969 ~ 9794192 (+) True G26391
TU35382 lncRNA downstream 2254 10120601 ~ 10120852 (+) True G26458
TU35384 lncRNA downstream 3582 10121929 ~ 10122337 (+) True G26460
TU35388 lncRNA downstream 6186 10124533 ~ 10124762 (+) True G26464
TU35405 lncRNA downstream 115117 10233464 ~ 10241250 (+) True G26477
TU35424 lncRNA downstream 140725 10259072 ~ 10275437 (+) False G26494
XM_039794699.1 mRNA upstream 21447 9861152 ~ 10096639 (+) False lrrk1
XM_039794701.1 mRNA upstream 21447 9861152 ~ 10096639 (+) False lrrk1
XM_039794700.1 mRNA upstream 21447 9875792 ~ 10096639 (+) True lrrk1
XM_039794702.1 mRNA upstream 21447 9899924 ~ 10096639 (+) False lrrk1
XM_039795993.1 mRNA upstream 259402 9814697 ~ 9858684 (+) False aldh1a3
XM_039795154.1 mRNA downstream 306816 10425163 ~ 10465554 (+) True LOC120555943
XM_039795167.1 mRNA downstream 366116 10484463 ~ 10485311 (+) True LOC120555947
XM_039795168.1 mRNA downstream 409491 10527838 ~ 10609081 (+) True LOC120555948
XM_039795169.1 mRNA downstream 623363 10741710 ~ 10745326 (+) True LOC120555949
XM_039795093.1 mRNA downstream 671498 10789845 ~ 10840149 (+) False shcbp1
TU35313 other upstream 258086 9847277 ~ 9860000 (+) True aldh1a3
TU35242 other upstream 513650 9566831 ~ 9604436 (+) False adamts17
TU35121 other upstream 962743 9068729 ~ 9155343 (+) True G26236
TU35083 other upstream 1357785 8753701 ~ 8760301 (+) True G26205
TU34541 other upstream 3828310 6289056 ~ 6289776 (+) False LOC120555541
XR_005638880.1 other downstream 1913274 12031621 ~ 12031728 (+) True LOC120556595
TU36106 other downstream 2991410 13109757 ~ 13110339 (+) True G27086
TU36145 other downstream 3116888 13235235 ~ 13237819 (+) True LOC120556202
TU36647 other downstream 5323130 15441477 ~ 15446392 (+) False LOC120556433
TU36678 other downstream 5356817 15475164 ~ 15486421 (+) False LOC120556001

Expression Profile