RNA id: TU35388


Basic Information

Item Value
RNA id TU35388
length 230
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G26464
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 10124533 ~ 10124762 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgagtTCTGGcataaaacaatacaatactatctgatgtgataggatgtccaATTCCTACTGATCTGATTGTtctgttacttaatgatgactctaaattacacctgctcgagagacagaggaagatttggctagccggctcaactgcaaccaagaaaatgatagctcaacgctggctccccccccccactcgctttgtataaaacagtggttagcgtattttctagacata

Function

GO:

id name namespace
GO:0043010 camera-type eye development biological_process

KEGG:

id description
ko05014 Amyotrophic lateral sclerosis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35384 lncRNA upstream 2196 10121929 ~ 10122337 (+) True G26460
TU35382 lncRNA upstream 3681 10120601 ~ 10120852 (+) True G26458
TU35381 lncRNA upstream 6186 10118086 ~ 10118347 (+) True G26457
TU35380 lncRNA upstream 10346 10113913 ~ 10114187 (+) True G26456
TU35376 lncRNA upstream 23116 10100332 ~ 10101417 (+) False G26452
TU35405 lncRNA downstream 108702 10233464 ~ 10241250 (+) True G26477
TU35424 lncRNA downstream 134310 10259072 ~ 10275437 (+) False G26494
TU35425 lncRNA downstream 134310 10259072 ~ 10262584 (+) True G26494
TU35441 lncRNA downstream 169013 10293775 ~ 10294128 (+) True G26504
TU35442 lncRNA downstream 184912 10309674 ~ 10310003 (+) True G26505
XM_039794699.1 mRNA upstream 27894 9861152 ~ 10096639 (+) False lrrk1
XM_039794701.1 mRNA upstream 27894 9861152 ~ 10096639 (+) False lrrk1
XM_039794700.1 mRNA upstream 27894 9875792 ~ 10096639 (+) True lrrk1
XM_039794702.1 mRNA upstream 27894 9899924 ~ 10096639 (+) False lrrk1
XM_039795993.1 mRNA upstream 265849 9814697 ~ 9858684 (+) False aldh1a3
XM_039795154.1 mRNA downstream 300401 10425163 ~ 10465554 (+) True LOC120555943
XM_039795167.1 mRNA downstream 359701 10484463 ~ 10485311 (+) True LOC120555947
XM_039795168.1 mRNA downstream 403076 10527838 ~ 10609081 (+) True LOC120555948
XM_039795169.1 mRNA downstream 616948 10741710 ~ 10745326 (+) True LOC120555949
XM_039795093.1 mRNA downstream 665083 10789845 ~ 10840149 (+) False shcbp1
TU35313 other upstream 264533 9847277 ~ 9860000 (+) True aldh1a3
TU35242 other upstream 520097 9566831 ~ 9604436 (+) False adamts17
TU35121 other upstream 969190 9068729 ~ 9155343 (+) True G26236
TU35083 other upstream 1364232 8753701 ~ 8760301 (+) True G26205
TU34541 other upstream 3834757 6289056 ~ 6289776 (+) False LOC120555541
XR_005638880.1 other downstream 1906859 12031621 ~ 12031728 (+) True LOC120556595
TU36106 other downstream 2984995 13109757 ~ 13110339 (+) True G27086
TU36145 other downstream 3110473 13235235 ~ 13237819 (+) True LOC120556202
TU36647 other downstream 5316715 15441477 ~ 15446392 (+) False LOC120556433
TU36678 other downstream 5350402 15475164 ~ 15486421 (+) False LOC120556001

Expression Profile