RNA id: TU35405


Basic Information

Item Value
RNA id TU35405
length 1258
lncRNA type inter_gene
GC content 0.44
exon number 6
gene id G26477
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 10233464 ~ 10241250 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCAGTGACCAAATCTTTATTGCATAAAAACAGACATACCCTCCTTACATTTTGTTCAAAATGTTAATTAACTATATGCCCACCAGCTACAGCTGCTGTAGTAATATCAAGTCTAAAGCTATGGtggtacacatttaaaaaaaaaaaaaaaaaaaacacactgactGTGAAATTCATCAGCCAAACCTAATGGTTACATACCATTTACAGGAATGGCGTCATTACAAGCTTTCAATTCCAAAATGCATTTGTCCCTTAGCAATATGATTCATTATTATCACAGTATATTTGATGCTTAATAAGGCAGAGAGTTTAGAGAGTAAATAAACAAGCAGAAAGGATAGCAGGTATATGCTACCAACGATCAACACCCCCTGAAAGTATGgagcaggttaaaaaaaatatatatatatttgtctaAAGCGTGGGTTTGGTGCTACTGTCAGCTTggttcagtcagtcagtgtgcCCATCAGGATGTCAGAGGTCAAAAGGTCATACAGACCAATGTCTCTAACCTTCTTTAACCTCATCCACCAGATGACGGTCCTCTCCTGCCAGGTCTCCAGGAGCAGGAGCCTCCTCCCTGTCCAGTCAGGGGATTGtagtCTGCACCGCGAAGTGGCTTCTTGTCTGCCTTTGGTTTCAGCACTGTTGTTGATGAGCTGGCCTCTCCAGTGGCCTGAGAAGGTTGTGCAGTTCCTTTGTAACTCTTTCCCTGTTGCATACACTCCCATATCTCTATTTTCtgcttcctcttctcttcttcttgctgtttctgtttctctctgaagaTGCTAGCTTTGGCATCAAGCTCCTCTTGCATCTTTCTCCGAGCTGCTTCCATGGCTTCTTGTCTTCTTGCCACTAACACGGCATCTTGCGGTGTTTGTGGGGGGGAGCTGCGAGAGCTCTGGCTGGATCTCCTCTTGCTCAGGTGCTGGATGACCAGGTAGACCAGAACAGTCACAACCAGCAGGTACCATCCATACTGGGACAGAAGCTCTCCTACTTTAGGCTTATGGAACTCAGATCCTGGTTTTTGAGGGGCGCCTTCTCCACCTGGTAGAGCGAGCCATCGTCATTGACATCTGTAATCTCCACATCATCCATATCAGACTAAAATAAAAGCCGTCCGTTTAGGGCACGAAAACGTATCTCCCGTCTGGCGTTGCAAACCTTAGCTCCTTCCCATGTCAACCATATTTGTTAGAACTGGCTGCTTCTTTTGATTTTATAGCGGATTGCGACAGTTACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35388 lncRNA upstream 108702 10124533 ~ 10124762 (+) True G26464
TU35384 lncRNA upstream 111127 10121929 ~ 10122337 (+) True G26460
TU35382 lncRNA upstream 112612 10120601 ~ 10120852 (+) True G26458
TU35381 lncRNA upstream 115117 10118086 ~ 10118347 (+) True G26457
TU35380 lncRNA upstream 119277 10113913 ~ 10114187 (+) True G26456
TU35424 lncRNA downstream 17822 10259072 ~ 10275437 (+) False G26494
TU35425 lncRNA downstream 17822 10259072 ~ 10262584 (+) True G26494
TU35441 lncRNA downstream 52525 10293775 ~ 10294128 (+) True G26504
TU35442 lncRNA downstream 68424 10309674 ~ 10310003 (+) True G26505
TU35446 lncRNA downstream 89441 10330691 ~ 10336382 (+) True G26508
XM_039794699.1 mRNA upstream 136825 9861152 ~ 10096639 (+) False lrrk1
XM_039794701.1 mRNA upstream 136825 9861152 ~ 10096639 (+) False lrrk1
XM_039794700.1 mRNA upstream 136825 9875792 ~ 10096639 (+) True lrrk1
XM_039794702.1 mRNA upstream 136825 9899924 ~ 10096639 (+) False lrrk1
XM_039795993.1 mRNA upstream 374780 9814697 ~ 9858684 (+) False aldh1a3
XM_039795154.1 mRNA downstream 183913 10425163 ~ 10465554 (+) True LOC120555943
XM_039795167.1 mRNA downstream 243213 10484463 ~ 10485311 (+) True LOC120555947
XM_039795168.1 mRNA downstream 286588 10527838 ~ 10609081 (+) True LOC120555948
XM_039795169.1 mRNA downstream 500460 10741710 ~ 10745326 (+) True LOC120555949
XM_039795093.1 mRNA downstream 548595 10789845 ~ 10840149 (+) False shcbp1
TU35313 other upstream 373464 9847277 ~ 9860000 (+) True aldh1a3
TU35242 other upstream 629028 9566831 ~ 9604436 (+) False adamts17
TU35121 other upstream 1078121 9068729 ~ 9155343 (+) True G26236
TU35083 other upstream 1473163 8753701 ~ 8760301 (+) True G26205
TU34541 other upstream 3943688 6289056 ~ 6289776 (+) False LOC120555541
XR_005638880.1 other downstream 1790371 12031621 ~ 12031728 (+) True LOC120556595
TU36106 other downstream 2868507 13109757 ~ 13110339 (+) True G27086
TU36145 other downstream 2993985 13235235 ~ 13237819 (+) True LOC120556202
TU36647 other downstream 5200227 15441477 ~ 15446392 (+) False LOC120556433
TU36678 other downstream 5233914 15475164 ~ 15486421 (+) False LOC120556001

Expression Profile