RNA id: TU35425


Basic Information

Item Value
RNA id TU35425
length 3181
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G26494
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 10259072 ~ 10275437 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GATTGTTTCCACTTTTTAATCCATCTCTTGGGACTCCACCCAACTGTATGGAAGTGTGATACCCTTCTAAAACATAGGACATTAACAAGCAGACTATATAGGTGGACTGCAATTAGCTGAGAATGCCAACTGCTTAAAGAAATTGGTCCCACACAGCAATATAAGAAATCAGTTTAATGTATGTcgttatacaaaataaaacagcccTGGTAAGATGTATGTCCAACACAAGAAATctacacagaaaatacaaaaaaacaacaacttattTCCAGGAACTCAGGAGCCATTAACTTGTGGCTCTTCATCCATgtcttcttcatcctcctcctggTCACCCTCATTCATCTCTTCTCCAGGACCTCCACCCATATGTGACTCCATCTGTGCAGTGtcgtcctcttcttcttcctcctctaccATATCAGCTGGACCTTGTCTCAGATCTCGTCCTGGGATCTGACCAGCCTGCAGCATCCCTTTCAACCTCTCCACCTCTGCCAACGATGAAGCATTAGCGATAGCATTCTGAAATACAAACGCACAATCTCTAAGCTAACATGGTCTGTTGAATTATTGAAGATTTTCAGAGATCAATTTTCATTCAGCAGGCTAAAGATCTGAATCTTCATCCAGGTTATTTTAATACATCAGTGGTGCTTAATCTCCAAAGTGGTTGCATTAACATTACTTCGAGTTGATTATATCACAGCATATGCCAATAGGAACATGCTTCAAAAGGCACATTTTAACCAACATATCAGGAATGAAAAACGACAAATTTTAAAGTTATGCATAAGTGTGCATTCTTTAAACttaaaaaccaaaccaaaatatGCATTCAGTCAAGGTTCACCACAGGCTTTTTCTTTCAACCTCATCtcaatttaatttttattttaaaatcagtgGGTGGAGTCATTAGGGGCCCGGTATTTCAAAACTGGATCAGAATGATCTGGAAAATGAAATCTCCCTTTTCTCAGTAACTTTGTCCCAGTATTTTAAAACATTGGCAAGTTGGATCATGGTGATCCAGATATGACCAGATAGGGATTTCCAGAACTCGAGTCCCAGCTCCTGGATCGGAACAGAAAAGCAAAGGCCAGACTATTTTATGTAAGGTGCAAGTGGTAGCAAAGCTTTCTCGTCCAAATCTACAAAGTATACCTTTGTATAATGTATAGCATTAGTAAGACTATACCAATGGCAACCAATCATGTCTCACCTACTAAAAACGAGGGTGTTCGCTAATTAAGCCTAGGTCATGCAAACAGCAACAAACTTCACTGTGCTGACTTCTAGGTTAGGTAGCTAGCAGGTTAGCCAGCTAGCGGGCTTTGTTGATGTATGTTACGGTCTATGGTTCaaccttaaagggatacttcaccgatttagcattcagctttgtatcagtagaaacccgatagtatttctgaatgaacgtgcttccctccctcatgtccccctgagacgagagatctctgcatttggggcctggaaaaaaatcttccgatgacttAAAATggcgatttttgcgtcatcggaagatttttgggccagaggcaaggactacagccagttagtaggatctacttccgcatgttttcaacacgcccacagggggttggactgccgagtctggcagAGAtcttccgaatgaaaacgactgtcagccatcttgaagcttcgctaaacaggctctcggttttcagcagaaaacatttacaacaattatctgcattcaaactaccggacgtgtgtaccaccgggatacatcagtacagatcggagaatatgcaggaaacgttattacagatggaatactcggcacactacgtgagattcgcctgcacggagaccagcggtgtcgctcaatgccgctagccggctaggggacatcctcatcggctaggtggaaagctaacgctagctgttcacctgtcccatccatcctgcttgcaagtgtctgctcattaaacaacaagctggactacatcctccttcaacgaaactcccaacctGAGTTCAGAGAcggctgtgtttttgtttttgtggaaacatgcctgaacaacagtgtaccggcaccgggactatccagctaccaggctgctcttgccggcccgtggaggtgggctgtgttaaactgactggtgtagaaataaaatccaactagctactgcttactgctggtggagcttgtgactgttaaatgccgaccattcgacattccacgctaattcacggctgtgtttagctacaccaatgctagtatgcgttagctgaactttacggatcctgcttgcaagtgtccgctcatttagaccacaaactggactacatccaacttcaacgaaactcccaacgtgagttcagagactgctgtgtttttgttgttgtggaaacatgcctgaatagtgtaccggactgtccagctaccaggcctgctagccctccgagctagagatgctctgtcgccgggtaaaagaggtgggctgcgTTAACACAgtgtggtgcagaaatgtggtgatttgtatccatttaactgctaactgctggtggagtttgactgttaaatgccgaccattctacattgcacgctaattctcggctgtgtttatgctcggtgtttacagcccaccaagtgctaatgctagtatgtgttagctgaactttacggagcctataaagtgtgtgtactaaatgtacaGGGCTCGACACAAGCAacggcccgatggcccggggccagtaaaaacgtatgtcgggctggttgatTGGCCAGTCACTGGCCCGCACGGGCCAGTACCAACGTCATACAGAGTGGCACGAAGCGTgtaaatgttaacatttcacattttcacctcaggtaatttataaacaattcatttggatacaagTGTTGCATTTTGGAAGATAGATTGGATTCAGAACAGCGATGTCCGcgctgcgcgcacacacacagcagggccGAGGTGTGTGcgttcacgcagcacatgtaactgaatggaaacgttaccgaggattatttaccgccgatggcgcagatgaactaacgttacactcgttactgtaagtagcctagcctacaataaaacctccatgattaaagagtcaatacttatcaataacccacctaCCTGTTGTACAGGCATAatcatgtagaaagcgatatttcagtctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35405 lncRNA upstream 17822 10233464 ~ 10241250 (+) True G26477
TU35388 lncRNA upstream 134310 10124533 ~ 10124762 (+) True G26464
TU35384 lncRNA upstream 136735 10121929 ~ 10122337 (+) True G26460
TU35382 lncRNA upstream 138220 10120601 ~ 10120852 (+) True G26458
TU35381 lncRNA upstream 140725 10118086 ~ 10118347 (+) True G26457
TU35441 lncRNA downstream 31191 10293775 ~ 10294128 (+) True G26504
TU35442 lncRNA downstream 47090 10309674 ~ 10310003 (+) True G26505
TU35446 lncRNA downstream 68107 10330691 ~ 10336382 (+) True G26508
TU35450 lncRNA downstream 122646 10385230 ~ 10385641 (+) True G26512
TU35466 lncRNA downstream 192817 10455401 ~ 10455612 (+) True G26526
XM_039794699.1 mRNA upstream 162433 9861152 ~ 10096639 (+) False lrrk1
XM_039794701.1 mRNA upstream 162433 9861152 ~ 10096639 (+) False lrrk1
XM_039794700.1 mRNA upstream 162433 9875792 ~ 10096639 (+) True lrrk1
XM_039794702.1 mRNA upstream 162433 9899924 ~ 10096639 (+) False lrrk1
XM_039795993.1 mRNA upstream 400388 9814697 ~ 9858684 (+) False aldh1a3
XM_039795154.1 mRNA downstream 162579 10425163 ~ 10465554 (+) True LOC120555943
XM_039795167.1 mRNA downstream 221879 10484463 ~ 10485311 (+) True LOC120555947
XM_039795168.1 mRNA downstream 265254 10527838 ~ 10609081 (+) True LOC120555948
XM_039795169.1 mRNA downstream 479126 10741710 ~ 10745326 (+) True LOC120555949
XM_039795093.1 mRNA downstream 527261 10789845 ~ 10840149 (+) False shcbp1
TU35313 other upstream 399072 9847277 ~ 9860000 (+) True aldh1a3
TU35242 other upstream 654636 9566831 ~ 9604436 (+) False adamts17
TU35121 other upstream 1103729 9068729 ~ 9155343 (+) True G26236
TU35083 other upstream 1498771 8753701 ~ 8760301 (+) True G26205
TU34541 other upstream 3969296 6289056 ~ 6289776 (+) False LOC120555541
XR_005638880.1 other downstream 1769037 12031621 ~ 12031728 (+) True LOC120556595
TU36106 other downstream 2847173 13109757 ~ 13110339 (+) True G27086
TU36145 other downstream 2972651 13235235 ~ 13237819 (+) True LOC120556202
TU36647 other downstream 5178893 15441477 ~ 15446392 (+) False LOC120556433
TU36678 other downstream 5212580 15475164 ~ 15486421 (+) False LOC120556001

Expression Profile