RNA id: TU35446


Basic Information

Item Value
RNA id TU35446
length 216
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G26508
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 10330691 ~ 10336382 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTAAGGTCGTTTTAATCCCTTAAAAACGTTGTTCGCCACTGACAGCTCATCAACGAACGGCCTACCTTAAAACTCCGGATCACTTCACTTTCACCTCTCAGCAGCTCACCGACAGCAGTCTTCACCCAAAACTCCTGCTAAACTCCGGACTGGATTCACGGACTGACTGCACTGACTacttgactgactgactggtaTAAACGTTacaaagtgtt

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0009987 cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35442 lncRNA upstream 20688 10309674 ~ 10310003 (+) True G26505
TU35441 lncRNA upstream 36563 10293775 ~ 10294128 (+) True G26504
TU35424 lncRNA upstream 55254 10259072 ~ 10275437 (+) False G26494
TU35425 lncRNA upstream 68107 10259072 ~ 10262584 (+) True G26494
TU35405 lncRNA upstream 89441 10233464 ~ 10241250 (+) True G26477
TU35450 lncRNA downstream 48848 10385230 ~ 10385641 (+) True G26512
TU35466 lncRNA downstream 119019 10455401 ~ 10455612 (+) True G26526
TU35470 lncRNA downstream 142640 10479022 ~ 10479361 (+) True G26530
XR_005638795.1 lncRNA downstream 323187 10659569 ~ 10660575 (+) True LOC120556100
TU35560 lncRNA downstream 434577 10770959 ~ 10771999 (+) True G26605
XM_039794699.1 mRNA upstream 234052 9861152 ~ 10096639 (+) False lrrk1
XM_039794701.1 mRNA upstream 234052 9861152 ~ 10096639 (+) False lrrk1
XM_039794700.1 mRNA upstream 234052 9875792 ~ 10096639 (+) True lrrk1
XM_039794702.1 mRNA upstream 234052 9899924 ~ 10096639 (+) False lrrk1
XM_039795993.1 mRNA upstream 472007 9814697 ~ 9858684 (+) False aldh1a3
XM_039795154.1 mRNA downstream 88781 10425163 ~ 10465554 (+) True LOC120555943
XM_039795167.1 mRNA downstream 148081 10484463 ~ 10485311 (+) True LOC120555947
XM_039795168.1 mRNA downstream 191456 10527838 ~ 10609081 (+) True LOC120555948
XM_039795169.1 mRNA downstream 405328 10741710 ~ 10745326 (+) True LOC120555949
XM_039795093.1 mRNA downstream 453463 10789845 ~ 10840149 (+) False shcbp1
TU35313 other upstream 470691 9847277 ~ 9860000 (+) True aldh1a3
TU35242 other upstream 726255 9566831 ~ 9604436 (+) False adamts17
TU35121 other upstream 1175348 9068729 ~ 9155343 (+) True G26236
TU35083 other upstream 1570390 8753701 ~ 8760301 (+) True G26205
TU34541 other upstream 4040915 6289056 ~ 6289776 (+) False LOC120555541
XR_005638880.1 other downstream 1695239 12031621 ~ 12031728 (+) True LOC120556595
TU36106 other downstream 2773375 13109757 ~ 13110339 (+) True G27086
TU36145 other downstream 2898853 13235235 ~ 13237819 (+) True LOC120556202
TU36647 other downstream 5105095 15441477 ~ 15446392 (+) False LOC120556433
TU36678 other downstream 5138782 15475164 ~ 15486421 (+) False LOC120556001

Expression Profile