RNA id: TU35448


Basic Information

Item Value
RNA id TU35448
length 357
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G26510
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 10364820 ~ 10365176 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agcatttccagatggacctgacaaaaagttatggaaatcattttgctacgttaaagtatgccaatttgacaaccaaacaaattgtcctagctagctaccacgcacgtatcatatcatatctcggttAAATTGAAGGTGATCAACAAATACCTTGAGATCCTTCTTCAACATTCCACtacgatgctctgtaccaaatttggcgaagatcggcctttaggggacgctataagcaacgtttatttgtttcgcccaataactcaatgcatttcaatggaaaattgcaattgcaatatctctgccacagtaaaagcaattaACACGAAATTTGTGGTGCTCGTTCGGCATGGCATTCTGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35444 lncRNA downstream 47694 10316748 ~ 10317126 (-) True G26507
TU35443 lncRNA downstream 48741 10315568 ~ 10316079 (-) True G26506
TU35391 lncRNA downstream 237630 10126830 ~ 10127190 (-) True G26467
TU35385 lncRNA downstream 242211 10122398 ~ 10122609 (-) True G26461
TU35379 lncRNA downstream 261655 10102920 ~ 10103165 (-) True G26455
TU35454 lncRNA upstream 21752 10386928 ~ 10387201 (-) True G26515
TU35461 lncRNA upstream 25800 10390976 ~ 10395296 (-) True LOC120556222
XR_005638828.1 lncRNA upstream 29743 10394919 ~ 10402234 (-) False LOC120556222
TU35465 lncRNA upstream 53294 10418470 ~ 10418816 (-) True G26525
TU35495 lncRNA upstream 254254 10619430 ~ 10619641 (-) True G26550
XM_039795220.1 mRNA downstream 71896 10259231 ~ 10292924 (-) True snrpa1
XM_039796025.1 mRNA downstream 119434 10244124 ~ 10245386 (-) True zgc:113274
XM_039795882.1 mRNA downstream 123593 10233464 ~ 10241227 (-) True selenos
XM_039795210.1 mRNA downstream 133098 10127978 ~ 10231722 (-) True chsy1
XM_039795797.1 mRNA downstream 1039532 9308597 ~ 9325288 (-) True fah
XM_039795490.1 mRNA upstream 275762 10640938 ~ 10731901 (-) False ano9b
XM_039795489.1 mRNA upstream 275762 10640938 ~ 10731901 (-) True ano9b
XM_039794260.1 mRNA upstream 380685 10745861 ~ 10750166 (-) True LOC120555515
XM_039795096.1 mRNA upstream 400997 10766173 ~ 10789770 (-) True tssc4
XM_039795097.1 mRNA upstream 401001 10766177 ~ 10789768 (-) False tssc4
TU35186 other downstream 1068074 9295068 ~ 9296746 (-) True G26298
TU35108 other downstream 1385744 8852787 ~ 8979076 (-) False LOC120555589
TU34939 other downstream 2217919 8144207 ~ 8146901 (-) True G26071
XR_005638761.1 other downstream 3020064 7332784 ~ 7344756 (-) False lmnl3
TU34701 other downstream 3720214 6642446 ~ 6644606 (-) False dok4
XR_005638773.1 other upstream 1111588 11476764 ~ 11510299 (-) True mtfmt
XR_005638741.1 other upstream 1278055 11643231 ~ 11669155 (-) True LOC120555651
TU35842 other upstream 1278395 11643571 ~ 11669269 (-) False LOC120555651
TU35894 other upstream 1595525 11960701 ~ 11961772 (-) True G26891
TU35932 other upstream 1939363 12304539 ~ 12304824 (-) True G26924

Expression Profile