RNA id: TU35560


Basic Information

Item Value
RNA id TU35560
length 465
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G26605
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 10770959 ~ 10771999 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ccccgagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagacagacagacagacagacagacagacagacagacagacacacagacacacacacacacacagacacacacagacagacagacagacagacagacacacagacagacacacacacagacacacacacagacacacacacacacacacacacacacacacagagtaaactgtctgcacttttgttgaagtcacagagagtcacggttggtttcaagtgtggttactgATTTGcaaaacttcacacagacagcgtttgctgcgatatgatattaatggcgagctgaAAGCGGTCACAGTGTTGTTGACGTTACACTGcctcttagacaagcaggcacaacggtggtttctctgccctgatgactgactgactgacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638795.1 lncRNA upstream 110384 10659569 ~ 10660575 (+) True LOC120556100
TU35470 lncRNA upstream 291598 10479022 ~ 10479361 (+) True G26530
TU35466 lncRNA upstream 315347 10455401 ~ 10455612 (+) True G26526
TU35450 lncRNA upstream 385318 10385230 ~ 10385641 (+) True G26512
TU35446 lncRNA upstream 434577 10330691 ~ 10336382 (+) True G26508
TU35603 lncRNA downstream 106943 10878942 ~ 10879304 (+) True G26634
TU35605 lncRNA downstream 128629 10900628 ~ 10900858 (+) True G26636
TU35609 lncRNA downstream 143713 10915712 ~ 10916142 (+) True G26639
TU35682 lncRNA downstream 404875 11176874 ~ 11177288 (+) True G26711
TU35683 lncRNA downstream 405674 11177673 ~ 11179253 (+) True G26712
XM_039795169.1 mRNA upstream 25633 10741710 ~ 10745326 (+) True LOC120555949
XM_039795168.1 mRNA upstream 161878 10527838 ~ 10609081 (+) True LOC120555948
XM_039795167.1 mRNA upstream 285648 10484463 ~ 10485311 (+) True LOC120555947
XM_039795154.1 mRNA upstream 305405 10425163 ~ 10465554 (+) True LOC120555943
XM_039794700.1 mRNA upstream 674320 9875792 ~ 10096639 (+) True lrrk1
XM_039795093.1 mRNA downstream 17846 10789845 ~ 10840149 (+) False shcbp1
XM_039795095.1 mRNA downstream 17854 10789853 ~ 10840149 (+) False shcbp1
XM_039795092.1 mRNA downstream 18071 10790070 ~ 10840149 (+) True shcbp1
XM_039794949.1 mRNA downstream 162634 10934633 ~ 11138398 (+) True minar1
XM_039794950.1 mRNA downstream 162634 10934633 ~ 11138398 (+) False minar1
TU35313 other upstream 910959 9847277 ~ 9860000 (+) True aldh1a3
TU35242 other upstream 1166523 9566831 ~ 9604436 (+) False adamts17
TU35121 other upstream 1615616 9068729 ~ 9155343 (+) True G26236
TU35083 other upstream 2010658 8753701 ~ 8760301 (+) True G26205
TU34541 other upstream 4481183 6289056 ~ 6289776 (+) False LOC120555541
XR_005638880.1 other downstream 1259622 12031621 ~ 12031728 (+) True LOC120556595
TU36106 other downstream 2337758 13109757 ~ 13110339 (+) True G27086
TU36145 other downstream 2463236 13235235 ~ 13237819 (+) True LOC120556202
TU36647 other downstream 4669478 15441477 ~ 15446392 (+) False LOC120556433
TU36678 other downstream 4703165 15475164 ~ 15486421 (+) False LOC120556001

Expression Profile