RNA id: TU35605


Basic Information

Item Value
RNA id TU35605
length 231
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G26636
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 10900628 ~ 10900858 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTAGTAACGCATTATTATTGATCTGTGATATCGTCGGAGTCAGGATTTattcatacagtctatggtcggaGTGCTAGCTTGTGGAGTTTGACATAAATGTTTCCAACGTGTTTAGCTGCTAGCCTTTTCCCTAGGTTGGAGCGTGTGGTATCTAGCTTGGTTTTGTGACCCACTTTTTTAATGAACGGCCAAGTGTGTCAGTCTCAGTTTTGTTGAACgctattatttgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35603 lncRNA upstream 21324 10878942 ~ 10879304 (+) True G26634
TU35560 lncRNA upstream 128629 10770959 ~ 10771999 (+) True G26605
XR_005638795.1 lncRNA upstream 240053 10659569 ~ 10660575 (+) True LOC120556100
TU35470 lncRNA upstream 421267 10479022 ~ 10479361 (+) True G26530
TU35466 lncRNA upstream 445016 10455401 ~ 10455612 (+) True G26526
TU35609 lncRNA downstream 14854 10915712 ~ 10916142 (+) True G26639
TU35682 lncRNA downstream 276016 11176874 ~ 11177288 (+) True G26711
TU35683 lncRNA downstream 276815 11177673 ~ 11179253 (+) True G26712
TU35684 lncRNA downstream 278753 11179611 ~ 11180118 (+) True G26713
TU35685 lncRNA downstream 286253 11187111 ~ 11187584 (+) True G26714
XM_039795093.1 mRNA upstream 60479 10789845 ~ 10840149 (+) False shcbp1
XM_039795095.1 mRNA upstream 60479 10789853 ~ 10840149 (+) False shcbp1
XM_039795092.1 mRNA upstream 60479 10790070 ~ 10840149 (+) True shcbp1
XM_039795169.1 mRNA upstream 155302 10741710 ~ 10745326 (+) True LOC120555949
XM_039795168.1 mRNA upstream 291547 10527838 ~ 10609081 (+) True LOC120555948
XM_039794949.1 mRNA downstream 33775 10934633 ~ 11138398 (+) True minar1
XM_039794950.1 mRNA downstream 33775 10934633 ~ 11138398 (+) False minar1
XM_039794951.1 mRNA downstream 33775 10934633 ~ 11137689 (+) False minar1
XM_039794952.1 mRNA downstream 33775 10934633 ~ 11121115 (+) False minar1
XM_039794953.1 mRNA downstream 33775 10934633 ~ 10975970 (+) False minar1
TU35313 other upstream 1040628 9847277 ~ 9860000 (+) True aldh1a3
TU35242 other upstream 1296192 9566831 ~ 9604436 (+) False adamts17
TU35121 other upstream 1745285 9068729 ~ 9155343 (+) True G26236
TU35083 other upstream 2140327 8753701 ~ 8760301 (+) True G26205
TU34541 other upstream 4610852 6289056 ~ 6289776 (+) False LOC120555541
XR_005638880.1 other downstream 1130763 12031621 ~ 12031728 (+) True LOC120556595
TU36106 other downstream 2208899 13109757 ~ 13110339 (+) True G27086
TU36145 other downstream 2334377 13235235 ~ 13237819 (+) True LOC120556202
TU36647 other downstream 4540619 15441477 ~ 15446392 (+) False LOC120556433
TU36678 other downstream 4574306 15475164 ~ 15486421 (+) False LOC120556001

Expression Profile