RNA id: TU35683


Basic Information

Item Value
RNA id TU35683
length 794
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G26712
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 11177673 ~ 11179253 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCATATTCCCAGTCATTACTTTGCCAAATCATCTGTGcagcagcacctcCGAGGGATCTTACTTTCCTGAGTATGAAGCTGGCCATCAAGGACTTCCCCGACTGGTAACAGACTGGAGCAGAGGCTGTAGCTGTTAGGGACAGCCTTTTTTTGCTACTgaaataatttacattatgatagACAGTGGACAATATAGTGTGACACTTAGTTTTTGTTCTCCAACatgtacacactgctgttgtgaAGCAGTGATATACAGCTCACGAGTGTGTAGTCAAAAGAGAGAAATACTATATATTTCAGCGACTCCTACAGattaagaaaaataatgaattttcttaataaataaatgttattcttGGCTCAAGTGTTTGGGTTCAAATAACATTACCATGATCCCATAGGCATGAAAAAATTGAGAAAGTGAcgttttttaaaactgaaacagGGTGTTGGACATCCTGTTGTGTGTGCAAGCCCTTtttattcagtccctccagaaaaacgcgattatgcgatcgcataattcaatgcataatcagccaaagtccgcatattcatgcaggggctgcattttttcaaatatgccgtactttcgccgcataaattgcagatttccgcgcaaaatatgcggtgcttgcatgatttcataatccccgcattttcgttgcagaaagttgaaaaaatgttgcgtttacttcacacaagagcagccattttcccctgtccatgggaacgttatgaagtgacgtaattacgcgatgtgaacatcatcgaaaagcaggtgttggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35682 lncRNA upstream 385 11176874 ~ 11177288 (+) True G26711
TU35609 lncRNA upstream 261531 10915712 ~ 10916142 (+) True G26639
TU35605 lncRNA upstream 276815 10900628 ~ 10900858 (+) True G26636
TU35603 lncRNA upstream 298369 10878942 ~ 10879304 (+) True G26634
TU35560 lncRNA upstream 405674 10770959 ~ 10771999 (+) True G26605
TU35684 lncRNA downstream 358 11179611 ~ 11180118 (+) True G26713
TU35685 lncRNA downstream 7858 11187111 ~ 11187584 (+) True G26714
TU35693 lncRNA downstream 29468 11208721 ~ 11209301 (+) True G26722
TU35695 lncRNA downstream 45167 11224420 ~ 11224725 (+) True G26724
XR_005638791.1 lncRNA downstream 124340 11303593 ~ 11325210 (+) True LOC120556080
XM_039794949.1 mRNA upstream 39275 10934633 ~ 11138398 (+) True minar1
XM_039794950.1 mRNA upstream 39275 10934633 ~ 11138398 (+) False minar1
XM_039794951.1 mRNA upstream 39984 10934633 ~ 11137689 (+) False minar1
XM_039794955.1 mRNA upstream 46201 11129921 ~ 11131472 (+) True LOC120555826
XM_039794952.1 mRNA upstream 56558 10934633 ~ 11121115 (+) False minar1
XM_039795938.1 mRNA downstream 724019 11903272 ~ 11912722 (+) True lto1
XM_039794273.1 mRNA downstream 1376794 12556047 ~ 12562553 (+) True LOC120555527
XM_039795800.1 mRNA downstream 1886699 13065952 ~ 13071332 (+) True LOC120556313
XM_039796119.1 mRNA downstream 1910282 13089535 ~ 13091435 (+) True LOC120556474
XM_039795868.1 mRNA downstream 1965254 13144507 ~ 13176403 (+) True si:cabz01068815.1
TU35313 other upstream 1317673 9847277 ~ 9860000 (+) True aldh1a3
TU35242 other upstream 1573237 9566831 ~ 9604436 (+) False adamts17
TU35121 other upstream 2022330 9068729 ~ 9155343 (+) True G26236
TU35083 other upstream 2417372 8753701 ~ 8760301 (+) True G26205
TU34541 other upstream 4887897 6289056 ~ 6289776 (+) False LOC120555541
XR_005638880.1 other downstream 852368 12031621 ~ 12031728 (+) True LOC120556595
TU36106 other downstream 1930504 13109757 ~ 13110339 (+) True G27086
TU36145 other downstream 2055982 13235235 ~ 13237819 (+) True LOC120556202
TU36647 other downstream 4262224 15441477 ~ 15446392 (+) False LOC120556433
TU36678 other downstream 4295911 15475164 ~ 15486421 (+) False LOC120556001

Expression Profile