RNA id: TU35685


Basic Information

Item Value
RNA id TU35685
length 474
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G26714
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 11187111 ~ 11187584 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ccgaaacccacgttagaggcaacacaaacatcgctgcatgtcacgctagtaaacactaataacacgttacacagcaggtaacgttagcctaccattagctagctacagtaaacacaaataacacgttacacagcaggtaacgttagcctaccgttacccacagtagtaactggattaaaaacggctaaaatgctgacagctaaacggtgtagtgtgactgtatttcactatagaggattccaacagcgggacgtcaaacagtctgctgctaaagctatgagctaaaagacacaaactagcactatggttcctgctgttgtctgaaaaacaaaacatacgggacaaaatgttgcgtttactggtaaacattgtgaccggcttatgatgaccgaccgctacctgttgtggaatgtTCCttacgttactctgtcctctgtgactgtctacatcgaaaaactaagctgcgcggtgcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35684 lncRNA upstream 6993 11179611 ~ 11180118 (+) True G26713
TU35683 lncRNA upstream 7858 11177673 ~ 11179253 (+) True G26712
TU35682 lncRNA upstream 9823 11176874 ~ 11177288 (+) True G26711
TU35609 lncRNA upstream 270969 10915712 ~ 10916142 (+) True G26639
TU35605 lncRNA upstream 286253 10900628 ~ 10900858 (+) True G26636
TU35693 lncRNA downstream 21137 11208721 ~ 11209301 (+) True G26722
TU35695 lncRNA downstream 36836 11224420 ~ 11224725 (+) True G26724
XR_005638791.1 lncRNA downstream 116009 11303593 ~ 11325210 (+) True LOC120556080
TU35720 lncRNA downstream 125440 11313024 ~ 11316099 (+) True G26744
TU35721 lncRNA downstream 130351 11317935 ~ 11318254 (+) True G26745
XM_039794949.1 mRNA upstream 48713 10934633 ~ 11138398 (+) True minar1
XM_039794950.1 mRNA upstream 48713 10934633 ~ 11138398 (+) False minar1
XM_039794951.1 mRNA upstream 49422 10934633 ~ 11137689 (+) False minar1
XM_039794955.1 mRNA upstream 55639 11129921 ~ 11131472 (+) True LOC120555826
XM_039794952.1 mRNA upstream 65996 10934633 ~ 11121115 (+) False minar1
XM_039795938.1 mRNA downstream 715688 11903272 ~ 11912722 (+) True lto1
XM_039794273.1 mRNA downstream 1368463 12556047 ~ 12562553 (+) True LOC120555527
XM_039795800.1 mRNA downstream 1878368 13065952 ~ 13071332 (+) True LOC120556313
XM_039796119.1 mRNA downstream 1901951 13089535 ~ 13091435 (+) True LOC120556474
XM_039795868.1 mRNA downstream 1956923 13144507 ~ 13176403 (+) True si:cabz01068815.1
TU35313 other upstream 1327111 9847277 ~ 9860000 (+) True aldh1a3
TU35242 other upstream 1582675 9566831 ~ 9604436 (+) False adamts17
TU35121 other upstream 2031768 9068729 ~ 9155343 (+) True G26236
TU35083 other upstream 2426810 8753701 ~ 8760301 (+) True G26205
TU34541 other upstream 4897335 6289056 ~ 6289776 (+) False LOC120555541
XR_005638880.1 other downstream 844037 12031621 ~ 12031728 (+) True LOC120556595
TU36106 other downstream 1922173 13109757 ~ 13110339 (+) True G27086
TU36145 other downstream 2047651 13235235 ~ 13237819 (+) True LOC120556202
TU36647 other downstream 4253893 15441477 ~ 15446392 (+) False LOC120556433
TU36678 other downstream 4287580 15475164 ~ 15486421 (+) False LOC120556001

Expression Profile