RNA id: TU35811


Basic Information

Item Value
RNA id TU35811
length 1783
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G26816
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 11606323 ~ 11609317 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctgtgtaaaaacaaaatgcaaataTGTATTGttaattgttattttatttcagCAAATGACAATGagaattgtttttttctgtatctGATTTACAAGAGGGTTTTCACACAGATTtaaaaaggggagagaaaatGGTCAATTCCCTCTCCAATAAATCAACAATAGCTAAGGAAGAGAAATCAGCAGACACTGTCAGAAGCTGCAGCACATGTATACATCAGTAGGTTCTCAGTATGGCAACTTGTCAACTAGCATACAATCCTGAGAAATCTCTGCACCCTCCCACAACATACTAACCCCAATGACAGTGTCGCCAAGCAACAGGATTTAATTAATCAACAAAATTTGGAAACAGTCAAGACATTGTAGTTGGTGGGATCCATgtagagtaaactgaaaaccaggCCTTATATTACAAGCACACTAAATCAGGCAAATACATGCTGCAGTTCTGAACGTGCCAATCCATTGGTGAGAAGTCCAGAAATCAACAATACATGAAATATGGAGTCCATAGAGAGATGAGAGACAAATCTGATGTTATTAAGAAGAAGCACTGCTTAAGCATGAGAGGATCTTGTCAAAATGACAATTTTCCCACCTATAAATCCCTAGATTTGTAAGgttatttgtatttctttgcaGCCCAGCTGGGACAGCAGAAGAACTGGATCATGCAAAATGCTGCACAATTATTAACTGAATTGACCGACCAGGTGATAAAGACGCTTTTAATGGAAACAACATTGTTTGCACTGTTCCTGTGGGGCCATAGTTTGCATGTACTTCCATACATCAGGTCTTCAGTTTCGCTTGTTCCAACCAGTTTAAAAATAGCTACAAAGCCATCCCAAGGAACAGCAGTTATTCAGGGGTTATTCGTATGCAATACAGCTGTAACACCAATACTAGATCTTGTAGCCGTTATACACTCACGGCAATACATTCACTTCTCAATATGGAAAGATGCGAACACATGAGGGGTTGATGACTCAGCAGGTACACCTACAACAGCTAGTAAATCTATTGATAATCAAAGGAATAGTGCCTACGACTTGCCACAAGTGCACGTTAAAGCTAAGTGCAGTGTTGTTGGCAcacgcttctcaaatgtaacaTCTCCAACCTGTTGCAGAAAACCATTCTGCAAGTGAGGGACGGTGAAGAGGAAATGATGcagaaaaattaataataataaaatgaaggagTGAGTACTTTAGCTCTTcttgatatttatttttattcccgGCCTACAGGATGGGATTTTGTGAGTTCTTGTGAGTGTGTGCTGttgtatatttataatatagtgAAACATCTATGGATGGACTTCACATCCTTCCAACCTGCGTGAGTTTTAAAGGACCAGGCCCTCATAGGCAGGGCCCTCAGACTCGGGGGATTCTCTCTGCAGGCGAAGATGCTCCAGTGTGTTGTGGAAGTGTTTGTTGATCTGCTCCGTTTCCTCACTCGCCTCCAGGTTGGGAAGGTCTTCTCTGATCTTCTGGATAAGCTGGTTTAATACCTGGACAGTCACCTGGACAGGTGGAGGATGAGGGACAGTTGCTGCGACCTGACCAAAAGAGATGGGCGCAGATACTGACGGCTCGGCACTGGTCAGGCTTCTTCAGCAGCTTGGAGGCAGCCAGCGCACACTGAGTCCTCAGCGGCTCATGGTTTTCCTCGCTGAAACACCGCATTCGCTCAAAGGTACCAATGATCAGTGTGATGGCTGCCAACTGGGCTTTAGAGTCACTGATCTCATCCTCGTACAGAGAGAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35766 lncRNA upstream 140155 11465951 ~ 11466168 (+) True G26781
XR_005638742.1 lncRNA upstream 226823 11378435 ~ 11379500 (+) True LOC120555674
TU35724 lncRNA upstream 270516 11335435 ~ 11335807 (+) True G26748
TU35722 lncRNA upstream 276666 11325943 ~ 11329657 (+) True G26746
TU35721 lncRNA upstream 288069 11317935 ~ 11318254 (+) True G26745
TU35812 lncRNA downstream 1442 11610759 ~ 11615676 (+) True G26817
XR_005638825.1 lncRNA downstream 116301 11725618 ~ 11728296 (+) True LOC120556208
TU35863 lncRNA downstream 156350 11765667 ~ 11765967 (+) True G26861
TU35880 lncRNA downstream 202366 11811683 ~ 11811942 (+) True G26878
TU35883 lncRNA downstream 294054 11903371 ~ 11912715 (+) False lto1
XM_039794949.1 mRNA upstream 467925 10934633 ~ 11138398 (+) True minar1
XM_039794950.1 mRNA upstream 467925 10934633 ~ 11138398 (+) False minar1
XM_039794951.1 mRNA upstream 468634 10934633 ~ 11137689 (+) False minar1
XM_039794955.1 mRNA upstream 474851 11129921 ~ 11131472 (+) True LOC120555826
XM_039794952.1 mRNA upstream 485208 10934633 ~ 11121115 (+) False minar1
XM_039795938.1 mRNA downstream 293955 11903272 ~ 11912722 (+) True lto1
XM_039794273.1 mRNA downstream 946730 12556047 ~ 12562553 (+) True LOC120555527
XM_039795800.1 mRNA downstream 1456635 13065952 ~ 13071332 (+) True LOC120556313
XM_039796119.1 mRNA downstream 1480218 13089535 ~ 13091435 (+) True LOC120556474
XM_039795868.1 mRNA downstream 1535190 13144507 ~ 13176403 (+) True si:cabz01068815.1
TU35313 other upstream 1746323 9847277 ~ 9860000 (+) True aldh1a3
TU35242 other upstream 2001887 9566831 ~ 9604436 (+) False adamts17
TU35121 other upstream 2450980 9068729 ~ 9155343 (+) True G26236
TU35083 other upstream 2846022 8753701 ~ 8760301 (+) True G26205
TU34541 other upstream 5316547 6289056 ~ 6289776 (+) False LOC120555541
XR_005638880.1 other downstream 422304 12031621 ~ 12031728 (+) True LOC120556595
TU36106 other downstream 1500440 13109757 ~ 13110339 (+) True G27086
TU36145 other downstream 1625918 13235235 ~ 13237819 (+) True LOC120556202
TU36647 other downstream 3832160 15441477 ~ 15446392 (+) False LOC120556433
TU36678 other downstream 3865847 15475164 ~ 15486421 (+) False LOC120556001

Expression Profile