RNA id: TU35812


Basic Information

Item Value
RNA id TU35812
length 1164
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G26817
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 11610759 ~ 11615676 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAATGAGGAGTTCTCCTTGTATCTGAAGGCCAGCTGGTAGGCAGCGAACACCAGAGGAGGGAGTGTGTAGCGAATCCTTAGGTTCCCACCTGCACCAAAGTGTTTCCGGGCTGTGTTCAGAATCTGACCACAAACCAGAGTGTTAACGTTAATGAACAACAGCAAAGACATTGTGGCTTACCAACCCCAACAGAGAAAGTTATAGAAACATGAAACACACAGCAGTTTTAAATCCAAAGCATGCCATAGAGTTACagatttttaaatgcattttcatACTTTCAAGGCAGCCACTGGTTTACATTCATTTCCTTATGATGTAAATCAATGAACAGTGTGTAATCCATCAAGGTgcacattaaagctatagtgcgtagtttctgtctcccccatgaggaattttaagtaatgacTACAATACTGTCGGCgagtccacatgacacaagccttccatgactgcgccctccatgcagttgctagtagccaaggagacACGGAGGATTGAAAAAACATTAACTCTTCAGGTTAAGGTAATTATCTTAACTCGAGCTTCCGCACGGGAATGTCACCGGACACCAGTCTTCTGaatatagccatactgagaaatacagagagaggagctgatcgtcttaattagctttgtagcaactcatttggcaatggcttgattGTAacgttcattttatttcattttaatatgtATACATCTTAGTTCATTCACTGGCATGCTCCTTTACTGTTGAGGAAAGGACCCACAAGATACTGTTGATCCGGATCTTCGGAGTGGAGTAGATGGATGAAACGACCCACAAGGCTCTGCTCCTCAGCAAAGTCCTCAGGGTCAGGGTCATCAGCTGGTTGGTCTGGCTGGTCCTGTATCAGTGTGGATACCAAGCTCAAGATGGCGTCCACCTGTTCCTGTTCCAGAATGGTGGTGTTGTAGTCCAGTGTGTTGCTCAGCACATAGCAACTCATGCTCTTGCGTGACTCGTAGTCAAAGTACTCAAAGAGTGGTGGGAAGTGCTTGAGCTGCAGCACGGTCAGGATGTTGTTGTAGGTATCCACTGGGATCTTCAACAGTCGGGTTAGTTCCTTTGACACTGCGCTGCTGGTTGCTATGCTAGGGGAGGGGAAAGAACGGAACGGGTAAAAGTGGGACACGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35811 lncRNA upstream 1442 11606323 ~ 11609317 (+) True G26816
TU35766 lncRNA upstream 144591 11465951 ~ 11466168 (+) True G26781
XR_005638742.1 lncRNA upstream 231259 11378435 ~ 11379500 (+) True LOC120555674
TU35724 lncRNA upstream 274952 11335435 ~ 11335807 (+) True G26748
TU35722 lncRNA upstream 281102 11325943 ~ 11329657 (+) True G26746
XR_005638825.1 lncRNA downstream 109942 11725618 ~ 11728296 (+) True LOC120556208
TU35863 lncRNA downstream 149991 11765667 ~ 11765967 (+) True G26861
TU35880 lncRNA downstream 196007 11811683 ~ 11811942 (+) True G26878
TU35883 lncRNA downstream 287695 11903371 ~ 11912715 (+) False lto1
XR_005638841.1 lncRNA downstream 323398 11939074 ~ 11939803 (+) True LOC120556354
XM_039794949.1 mRNA upstream 472361 10934633 ~ 11138398 (+) True minar1
XM_039794950.1 mRNA upstream 472361 10934633 ~ 11138398 (+) False minar1
XM_039794951.1 mRNA upstream 473070 10934633 ~ 11137689 (+) False minar1
XM_039794955.1 mRNA upstream 479287 11129921 ~ 11131472 (+) True LOC120555826
XM_039794952.1 mRNA upstream 489644 10934633 ~ 11121115 (+) False minar1
XM_039795938.1 mRNA downstream 287596 11903272 ~ 11912722 (+) True lto1
XM_039794273.1 mRNA downstream 940371 12556047 ~ 12562553 (+) True LOC120555527
XM_039795800.1 mRNA downstream 1450276 13065952 ~ 13071332 (+) True LOC120556313
XM_039796119.1 mRNA downstream 1473859 13089535 ~ 13091435 (+) True LOC120556474
XM_039795868.1 mRNA downstream 1528831 13144507 ~ 13176403 (+) True si:cabz01068815.1
TU35313 other upstream 1750759 9847277 ~ 9860000 (+) True aldh1a3
TU35242 other upstream 2006323 9566831 ~ 9604436 (+) False adamts17
TU35121 other upstream 2455416 9068729 ~ 9155343 (+) True G26236
TU35083 other upstream 2850458 8753701 ~ 8760301 (+) True G26205
TU34541 other upstream 5320983 6289056 ~ 6289776 (+) False LOC120555541
XR_005638880.1 other downstream 415945 12031621 ~ 12031728 (+) True LOC120556595
TU36106 other downstream 1494081 13109757 ~ 13110339 (+) True G27086
TU36145 other downstream 1619559 13235235 ~ 13237819 (+) True LOC120556202
TU36647 other downstream 3825801 15441477 ~ 15446392 (+) False LOC120556433
TU36678 other downstream 3859488 15475164 ~ 15486421 (+) False LOC120556001

Expression Profile