RNA id: TU35880


Basic Information

Item Value
RNA id TU35880
length 260
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G26878
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 11811683 ~ 11811942 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtctaaaccgctggcaacaaaagtcagtacacccctatgttaaattcccatagaggcaggcagatttttatttttaaaggccagttatttcatggatccaggatactatgcatcctgataaagttcccttggtctttggaattaaaatagccccacatcatcacgtacccttcaccatacctagagattggcatggggtactttccataaaatcatgtctcaatgcaaatcaaactagctattaggctaactgacataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35863 lncRNA upstream 45716 11765667 ~ 11765967 (+) True G26861
XR_005638825.1 lncRNA upstream 83387 11725618 ~ 11728296 (+) True LOC120556208
TU35812 lncRNA upstream 196007 11610759 ~ 11615676 (+) True G26817
TU35811 lncRNA upstream 202366 11606323 ~ 11609317 (+) True G26816
TU35766 lncRNA upstream 345515 11465951 ~ 11466168 (+) True G26781
TU35883 lncRNA downstream 91429 11903371 ~ 11912715 (+) False lto1
XR_005638841.1 lncRNA downstream 127132 11939074 ~ 11939803 (+) True LOC120556354
TU35893 lncRNA downstream 148749 11960691 ~ 11961733 (+) True G26890
TU35896 lncRNA downstream 151629 11963571 ~ 11963859 (+) True G26893
TU35909 lncRNA downstream 302900 12114842 ~ 12115122 (+) True G26903
XM_039794949.1 mRNA upstream 673285 10934633 ~ 11138398 (+) True minar1
XM_039794950.1 mRNA upstream 673285 10934633 ~ 11138398 (+) False minar1
XM_039794951.1 mRNA upstream 673994 10934633 ~ 11137689 (+) False minar1
XM_039794955.1 mRNA upstream 680211 11129921 ~ 11131472 (+) True LOC120555826
XM_039794952.1 mRNA upstream 690568 10934633 ~ 11121115 (+) False minar1
XM_039795938.1 mRNA downstream 91330 11903272 ~ 11912722 (+) True lto1
XM_039794273.1 mRNA downstream 744105 12556047 ~ 12562553 (+) True LOC120555527
XM_039795800.1 mRNA downstream 1254010 13065952 ~ 13071332 (+) True LOC120556313
XM_039796119.1 mRNA downstream 1277593 13089535 ~ 13091435 (+) True LOC120556474
XM_039795868.1 mRNA downstream 1332565 13144507 ~ 13176403 (+) True si:cabz01068815.1
TU35313 other upstream 1951683 9847277 ~ 9860000 (+) True aldh1a3
TU35242 other upstream 2207247 9566831 ~ 9604436 (+) False adamts17
TU35121 other upstream 2656340 9068729 ~ 9155343 (+) True G26236
TU35083 other upstream 3051382 8753701 ~ 8760301 (+) True G26205
TU34541 other upstream 5521907 6289056 ~ 6289776 (+) False LOC120555541
XR_005638880.1 other downstream 219679 12031621 ~ 12031728 (+) True LOC120556595
TU36106 other downstream 1297815 13109757 ~ 13110339 (+) True G27086
TU36145 other downstream 1423293 13235235 ~ 13237819 (+) True LOC120556202
TU36647 other downstream 3629535 15441477 ~ 15446392 (+) False LOC120556433
TU36678 other downstream 3663222 15475164 ~ 15486421 (+) False LOC120556001

Expression Profile