RNA id: XM_039795938.1


Basic Information

Item Value
RNA id XM_039795938.1
length 1045
RNA type mRNA
GC content 0.47
exon number 5
gene id lto1
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 11903272 ~ 11912722 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCTCCAGACAGCCAGGGAGCAGCACTGCTCTGATGGCGGAGGAAGCAGTTCCGTCTGCCTGCTGGAAATTGGTAGAATCCATACAGTAAGCAGTTTGTAGCggttagcagtcagcattttagcttACATCTGTGTTGATTAATGCATCTGGCGCATAGGGCTGTAAATACTGTGAAAACTGTTTTTACAGAATAATATTGTAAGTTAAGTGGAGATGGCTGGCGGCTCTGAAAATGAAGATCTATTTGACACTATTCTTCTAGCGGATGAAAGGTTCCGAGGGGAGGGCTACCGGGAGGGATTTGATAAAGGGACTCGCCGAGGACTGCAGGACGGTCGCAGACATGGTGCCGCTCATGGGGCAAAGCTCTCCACTGAGATTTCCTTCTATTATGGGTTTGCCATCACATGGAAATGTCTCCTCCAACATAATACAGATGTCAAATCAGGGAAGCGTATGAAAGCACTGGAGACTCTCCTGGGTTTGATCCAAAACTCCCCTCATGATGATCCGCAGTCTGAAAAGCTACAGGAGCACATGGAAAGACTTCGTGCCAAGTTCAGACAGGTCTGCTCTATGCTGAGTGTCCCGGCTGACTTCAACGATTACATCAAAACTTGTGAAGGGACTTCTTTCTGAACCCAGgctgatgaggaggaggtgctgaGACCACTCTACGTCCTGGACAGAAGACAGCGAAGTCCTGTCCTGGGCTTGGTCTGCAGTGGATTAATTTCAGGGTCTGCAGTGTGAAGAAGGGACTGCACCAGTTTGACAGTCCTCTTTGAGATTAGTCTTTGCCTTCACATTCTGGTGGGAAGGTCTAACTTGTAGGAAAGTCCACGCCCCGCATTTAACTGGAAAATCTCAGGAGACGACTGCAGCCACTGGAATGGAGTACCAGTAAGAAAGAAATGGTTATGTTTCTTGTTTGACTGTGGTAAATGAGTGGATTTATTGCCGTGATGTTGAAGCAACTGAATTGAAATCGAACAAAGACACAACAGAAGCAAAAGACGCCAAAATAAAATCTTGGAACATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35880 lncRNA upstream 91330 11811683 ~ 11811942 (+) True G26878
TU35863 lncRNA upstream 137305 11765667 ~ 11765967 (+) True G26861
XR_005638825.1 lncRNA upstream 174976 11725618 ~ 11728296 (+) True LOC120556208
TU35812 lncRNA upstream 287596 11610759 ~ 11615676 (+) True G26817
TU35811 lncRNA upstream 293955 11606323 ~ 11609317 (+) True G26816
XR_005638841.1 lncRNA downstream 26352 11939074 ~ 11939803 (+) True LOC120556354
TU35893 lncRNA downstream 47969 11960691 ~ 11961733 (+) True G26890
TU35896 lncRNA downstream 50849 11963571 ~ 11963859 (+) True G26893
TU35909 lncRNA downstream 202120 12114842 ~ 12115122 (+) True G26903
TU35918 lncRNA downstream 292026 12204748 ~ 12205002 (+) True G26911
XM_039794949.1 mRNA upstream 764874 10934633 ~ 11138398 (+) True minar1
XM_039794950.1 mRNA upstream 764874 10934633 ~ 11138398 (+) False minar1
XM_039794951.1 mRNA upstream 765583 10934633 ~ 11137689 (+) False minar1
XM_039794955.1 mRNA upstream 771800 11129921 ~ 11131472 (+) True LOC120555826
XM_039794952.1 mRNA upstream 782157 10934633 ~ 11121115 (+) False minar1
XM_039794273.1 mRNA downstream 643325 12556047 ~ 12562553 (+) True LOC120555527
XM_039795800.1 mRNA downstream 1153230 13065952 ~ 13071332 (+) True LOC120556313
XM_039796119.1 mRNA downstream 1176813 13089535 ~ 13091435 (+) True LOC120556474
XM_039795868.1 mRNA downstream 1231785 13144507 ~ 13176403 (+) True si:cabz01068815.1
XM_039795869.1 mRNA downstream 1248408 13161130 ~ 13176403 (+) False si:cabz01068815.1
TU35313 other upstream 2043272 9847277 ~ 9860000 (+) True aldh1a3
TU35242 other upstream 2298836 9566831 ~ 9604436 (+) False adamts17
TU35121 other upstream 2747929 9068729 ~ 9155343 (+) True G26236
TU35083 other upstream 3142971 8753701 ~ 8760301 (+) True G26205
TU34541 other upstream 5613496 6289056 ~ 6289776 (+) False LOC120555541
XR_005638880.1 other downstream 118899 12031621 ~ 12031728 (+) True LOC120556595
TU36106 other downstream 1197035 13109757 ~ 13110339 (+) True G27086
TU36145 other downstream 1322513 13235235 ~ 13237819 (+) True LOC120556202
TU36647 other downstream 3528755 15441477 ~ 15446392 (+) False LOC120556433
TU36678 other downstream 3562442 15475164 ~ 15486421 (+) False LOC120556001

Expression Profile