RNA id: TU35998



Basic Information


Item Value
RNA id TU35998
length 647
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G26980
representative True

Chromosome Information


Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 12599641 ~ 12600287 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


aggtaggtgctggagtagatcctggaaggtcagatacaggggatagggatttgtaaatgagattgattttgtcagtgaaaaagtggaggaatgagttgcagagatccggagtagaggtaaggaggctgttggtccgaggcttgatgaggttgttcaatgtggagaagagggttctggggttttggcaggggtcggtgaggatggtggagaggtaggcagatttggcagcaatgagggcatctttgtaggcgatgagatgggatttataggcttcatgatggactgtgagggatgatttctttgtcagacgttcaagttggcggccagtttgtttcatttttcggagtgcaggtgtgtaccagggtgaagaggtgttaaaagtgacgagttttgttttgaggggggccaggatgttgagggaggtagacaaggtggagttgaggtggtctgtgaggtcatcgggtgaggtgagggttgagtccaggtggagagtggtggagagcaggtcagagagatggtggggattgatagatttgaggttgcggaaggtgatttctctgaggaggcgggggcgtggggttggagaagggatggtgaaccgtatcagtttgtgatcagagaggggaaagaggcatggatggaggtcg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU35994 lncRNA upstream 159 12598949 ~ 12599482 (+) True G26979
XR_005638800.1 lncRNA upstream 7012 12587166 ~ 12592629 (+) True LOC120556106
TU35989 lncRNA upstream 29130 12570231 ~ 12570511 (+) True G26975
TU35981 lncRNA upstream 36416 12562808 ~ 12563225 (+) True G26967
XR_005638839.1 lncRNA upstream 103479 12495645 ~ 12496162 (+) True LOC120556331
TU36002 lncRNA downstream 38445 12638732 ~ 12638986 (+) True G26984
TU36012 lncRNA downstream 68589 12668876 ~ 12669301 (+) True G26994
TU36016 lncRNA downstream 72489 12672776 ~ 12674123 (+) True G26998
TU36030 lncRNA downstream 202176 12802463 ~ 12802680 (+) True G27012
TU36034 lncRNA downstream 226105 12826392 ~ 12826634 (+) True G27016
XM_039794273.1 mRNA upstream 37088 12556047 ~ 12562553 (+) True LOC120555527
XM_039795938.1 mRNA upstream 686919 11903272 ~ 11912722 (+) True lto1
XM_039794955.1 mRNA upstream 1468169 11129921 ~ 11131472 (+) True LOC120555826
XM_039794952.1 mRNA upstream 1478526 10934633 ~ 11121115 (+) False minar1
XM_039795800.1 mRNA downstream 465665 13065952 ~ 13071332 (+) True LOC120556313
XM_039796119.1 mRNA downstream 489248 13089535 ~ 13091435 (+) True LOC120556474
XM_039795868.1 mRNA downstream 544220 13144507 ~ 13176403 (+) True si:cabz01068815.1
XM_039795869.1 mRNA downstream 560843 13161130 ~ 13176403 (+) False si:cabz01068815.1
XM_039795643.1 mRNA downstream 604552 13204839 ~ 13208335 (+) True kbtbd13
XR_005638880.1 other upstream 567913 12031621 ~ 12031728 (+) True LOC120556595
TU35313 other upstream 2739641 9847277 ~ 9860000 (+) True aldh1a3
TU35242 other upstream 2995205 9566831 ~ 9604436 (+) False adamts17
TU35121 other upstream 3444298 9068729 ~ 9155343 (+) True G26236
TU35083 other upstream 3839340 8753701 ~ 8760301 (+) True G26205
TU36106 other downstream 509470 13109757 ~ 13110339 (+) True G27086
TU36145 other downstream 634948 13235235 ~ 13237819 (+) True LOC120556202
TU36647 other downstream 2841190 15441477 ~ 15446392 (+) False LOC120556433
TU36678 other downstream 2874877 15475164 ~ 15486421 (+) False LOC120556001
XR_005638756.1 other downstream 5124261 17724548 ~ 17742734 (+) True LOC120555788

Expression Profile