RNA id: TU36000


Basic Information

Item Value
RNA id TU36000
length 513
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G26982
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 12605622 ~ 12606134 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agcattcagctttgtatcagtagaaacccgatagtatttctgaatgaccgtgcctccctccctcatgtccccctgagacgagagatctctgcatttggggcctggaaaaaatcttccgatgacgtaaaatgacgatttttgcgtcatcggaagatttttgggccagaggcaaggactacagccagtagtaggatctacttccgtatgttttcaacacgcccacagggggttggactgccgagtctggccgaggtattccgaatgaaaacgactgtcagccatcttgaatcttcgctaaacaggctctcggttttcagcagaaaacatttacaacaattatctgcattcaaactaccggacgtgtgtaccaccgggatacatcggtacagatcggagaatatgcaggaaacgttattacagacgcaatactcggcacactacgcgagcttcgcctgcacggagaccagcggtgtcgctcaatgccgctagccggctaggggacatcctcatcgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35988 lncRNA downstream 40739 12564271 ~ 12564883 (-) True G26974
XR_005638721.1 lncRNA downstream 246991 12356686 ~ 12358631 (-) True LOC120555517
TU35933 lncRNA downstream 298742 12306659 ~ 12306880 (-) True G26925
TU35931 lncRNA downstream 321990 12283382 ~ 12283632 (-) True G26923
TU35929 lncRNA downstream 326209 12279149 ~ 12279413 (-) True G26921
TU36001 lncRNA upstream 3963 12610097 ~ 12610432 (-) True G26983
XR_005638837.1 lncRNA upstream 64387 12670521 ~ 12672689 (-) True LOC120556302
TU36019 lncRNA upstream 69846 12675980 ~ 12676229 (-) True G27001
TU36022 lncRNA upstream 88528 12694662 ~ 12694922 (-) True G27004
TU36029 lncRNA upstream 160507 12766641 ~ 12766842 (-) True G27011
XM_039795896.1 mRNA downstream 112451 12489220 ~ 12493171 (-) True vstm2b
XM_039795187.1 mRNA downstream 426951 12157744 ~ 12178671 (-) True LOC120555959
XM_039795659.1 mRNA downstream 618695 11980178 ~ 11986927 (-) True ccnd1
XM_039795544.1 mRNA downstream 808403 11794280 ~ 11797219 (-) True fgf3
XM_039795496.1 mRNA downstream 821185 11780768 ~ 11784437 (-) True fgf4
XM_039796072.1 mRNA upstream 582280 13188414 ~ 13198636 (-) True rasl12
XM_039795644.1 mRNA upstream 602195 13208329 ~ 13238252 (-) True ubap1lb
XM_039795200.1 mRNA upstream 634552 13240686 ~ 13248416 (-) True pdcd7
XM_039794264.1 mRNA upstream 679107 13285241 ~ 13294261 (-) True LOC120555522
XM_039796044.1 mRNA upstream 796190 13402324 ~ 13406615 (-) True chst1
TU35932 other downstream 300798 12304539 ~ 12304824 (-) True G26924
TU35894 other downstream 643850 11960701 ~ 11961772 (-) True G26891
TU35842 other downstream 936353 11643571 ~ 11669269 (-) False LOC120555651
XR_005638741.1 other downstream 936467 11643231 ~ 11669155 (-) True LOC120555651
XR_005638773.1 other downstream 1095323 11476764 ~ 11510299 (-) True mtfmt
TU36095 other upstream 463862 13069996 ~ 13095766 (-) True G27075
XR_005638877.1 other upstream 683076 13289210 ~ 13289264 (-) True LOC120556590
TU36388 other upstream 1863624 14469758 ~ 14470345 (-) True G27321
TU36517 other upstream 2236579 14842713 ~ 14843905 (-) True G27420
XR_005638870.1 other upstream 3033635 15639769 ~ 15639960 (-) True LOC120556584

Expression Profile