RNA id: TU36012


Basic Information

Item Value
RNA id TU36012
length 426
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G26994
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 12668876 ~ 12669301 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gcactacaggatttaccctattatagcctactttatcgacaggaatactgtagataggtcaaacagcaaacagccagccacaaatagtctataaacaaagcatcaggctgtctttgagatttcatatgaacaacggttaaagttactcaggctaccgaagaataccataattcctccattcaattagaccttagcgacgcaccccaagcttccatccttagcaaacagccatgtatatgggctcttTCAGTCTCTCCAcggctggctgttccaatttaacgggagagagaggagcaagaggggttaggatcatcttcagccagagaggacattatttcttcagcttcttcttgcgttgtcaccccagTGGCAAATGTGCCAACAGGGCTTGcaacaggtgaattagtcgtgctattaacatcatcg

Function

GO: NA

KEGG:

id description
ko03030 DNA replication
ko03420 Nucleotide excision repair
ko04110 Cell cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36002 lncRNA upstream 29890 12638732 ~ 12638986 (+) True G26984
TU35998 lncRNA upstream 68589 12599641 ~ 12600287 (+) True G26980
TU35994 lncRNA upstream 69394 12598949 ~ 12599482 (+) True G26979
XR_005638800.1 lncRNA upstream 76247 12587166 ~ 12592629 (+) True LOC120556106
TU35989 lncRNA upstream 98365 12570231 ~ 12570511 (+) True G26975
TU36016 lncRNA downstream 3475 12672776 ~ 12674123 (+) True G26998
TU36030 lncRNA downstream 133162 12802463 ~ 12802680 (+) True G27012
TU36034 lncRNA downstream 157091 12826392 ~ 12826634 (+) True G27016
TU36041 lncRNA downstream 201343 12870644 ~ 12870871 (+) True G27023
TU36046 lncRNA downstream 229674 12898975 ~ 12899187 (+) True G27028
XM_039794273.1 mRNA upstream 106323 12556047 ~ 12562553 (+) True LOC120555527
XM_039795938.1 mRNA upstream 756154 11903272 ~ 11912722 (+) True lto1
XM_039794955.1 mRNA upstream 1537404 11129921 ~ 11131472 (+) True LOC120555826
XM_039794952.1 mRNA upstream 1547761 10934633 ~ 11121115 (+) False minar1
XM_039795800.1 mRNA downstream 396651 13065952 ~ 13071332 (+) True LOC120556313
XM_039796119.1 mRNA downstream 420234 13089535 ~ 13091435 (+) True LOC120556474
XM_039795868.1 mRNA downstream 475206 13144507 ~ 13176403 (+) True si:cabz01068815.1
XM_039795869.1 mRNA downstream 491829 13161130 ~ 13176403 (+) False si:cabz01068815.1
XM_039795643.1 mRNA downstream 535538 13204839 ~ 13208335 (+) True kbtbd13
XR_005638880.1 other upstream 637148 12031621 ~ 12031728 (+) True LOC120556595
TU35313 other upstream 2808876 9847277 ~ 9860000 (+) True aldh1a3
TU35242 other upstream 3064440 9566831 ~ 9604436 (+) False adamts17
TU35121 other upstream 3513533 9068729 ~ 9155343 (+) True G26236
TU35083 other upstream 3908575 8753701 ~ 8760301 (+) True G26205
TU36106 other downstream 440456 13109757 ~ 13110339 (+) True G27086
TU36145 other downstream 565934 13235235 ~ 13237819 (+) True LOC120556202
TU36647 other downstream 2772176 15441477 ~ 15446392 (+) False LOC120556433
TU36678 other downstream 2805863 15475164 ~ 15486421 (+) False LOC120556001
XR_005638756.1 other downstream 5055247 17724548 ~ 17742734 (+) True LOC120555788

Expression Profile