RNA id: TU36046



Basic Information


Item Value
RNA id TU36046
length 213
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G27028
representative True

Chromosome Information


Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 12898975 ~ 12899187 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


gcaaaatatggcttttggtctcgaccgagtcaatgtgtctttattatgtgtataataatattggagggaaagtgaaacacagcttggacggggatgctgttcggcttttcacaagtttagacagctagctaatgctacgctgatgtttgctaacgttagcgctcaGCGCtcagctgtaataatggatatagctagctaatggttgtaattcac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU36041 lncRNA upstream 28104 12870644 ~ 12870871 (+) True G27023
TU36034 lncRNA upstream 72341 12826392 ~ 12826634 (+) True G27016
TU36030 lncRNA upstream 96295 12802463 ~ 12802680 (+) True G27012
TU36016 lncRNA upstream 224852 12672776 ~ 12674123 (+) True G26998
TU36012 lncRNA upstream 229674 12668876 ~ 12669301 (+) True G26994
TU36083 lncRNA downstream 125314 13024501 ~ 13024816 (+) True G27064
TU36101 lncRNA downstream 197644 13096831 ~ 13097130 (+) True G27081
TU36105 lncRNA downstream 209775 13108962 ~ 13109190 (+) True G27085
XR_005638794.1 lncRNA downstream 302230 13201417 ~ 13202220 (+) True LOC120556095
XR_005638824.1 lncRNA downstream 336226 13235413 ~ 13237052 (+) False LOC120556202
XM_039794273.1 mRNA upstream 336422 12556047 ~ 12562553 (+) True LOC120555527
XM_039795938.1 mRNA upstream 986253 11903272 ~ 11912722 (+) True lto1
XM_039794955.1 mRNA upstream 1767503 11129921 ~ 11131472 (+) True LOC120555826
XM_039794952.1 mRNA upstream 1777860 10934633 ~ 11121115 (+) False minar1
XM_039795800.1 mRNA downstream 166765 13065952 ~ 13071332 (+) True LOC120556313
XM_039796119.1 mRNA downstream 190348 13089535 ~ 13091435 (+) True LOC120556474
XM_039795868.1 mRNA downstream 245320 13144507 ~ 13176403 (+) True si:cabz01068815.1
XM_039795869.1 mRNA downstream 261943 13161130 ~ 13176403 (+) False si:cabz01068815.1
XM_039795643.1 mRNA downstream 305652 13204839 ~ 13208335 (+) True kbtbd13
XR_005638880.1 other upstream 867247 12031621 ~ 12031728 (+) True LOC120556595
TU35313 other upstream 3038975 9847277 ~ 9860000 (+) True aldh1a3
TU35242 other upstream 3294539 9566831 ~ 9604436 (+) False adamts17
TU35121 other upstream 3743632 9068729 ~ 9155343 (+) True G26236
TU35083 other upstream 4138674 8753701 ~ 8760301 (+) True G26205
TU36106 other downstream 210570 13109757 ~ 13110339 (+) True G27086
TU36145 other downstream 336048 13235235 ~ 13237819 (+) True LOC120556202
TU36647 other downstream 2542290 15441477 ~ 15446392 (+) False LOC120556433
TU36678 other downstream 2575977 15475164 ~ 15486421 (+) False LOC120556001
XR_005638756.1 other downstream 4825361 17724548 ~ 17742734 (+) True LOC120555788

Expression Profile