RNA id: TU36128



Basic Information


Item Value
RNA id TU36128
length 633
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G27108
representative True

Chromosome Information


Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 13170457 ~ 13171430 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GGATCCACGCAACAAACATATCTAAAGAGGGTGAAAGATTGTAATTAGAAATCACTgcaattttaagctttttattaAAAGGCATAAAAAGTGACTTGAGGAAAGTGGGTAATTTTTACAGAGATGACACACTACTATACAATTTTTTCACCTGAAGTTAAATCTAGCTATAAatcgagataaaaaggGCAGAACAGCAACAGAGGGAAGATGGAAGACACATGTGGGAGAGACACATAGAAGATGGAGGACACTGAGAGCGAAGAAGCACGTGATAGAGGACACTGAGAGCGAAGAAGAGACCAACAGGAGAACATGAAGGAGGACATGGAGAGAATGAGAGCACAACAGACGGAACGGAACAGACAGAGGAGCAGACAGAGAAAACTCAAACACCGATCGCTAGCGGCAACAGTGGGAGAAGGTAAAACTTCTCCCTTCCGCGTAAGTGTCTTTAAGACCGGTGTTTGTTTGAGTGTATCATAGTTTAAAAGAACGTTTGACTGGCCTAGAGTTCTCTTTTACAGGCTATGCCCCAGGAGAGGAGCCAAACGATAAAGAAGCTGGTTGCCAGCGGCCTGTGGACATTTTAATCCCTCACTCCTGTTGGACGACTGTTGGCTTGATTTTAGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU36082 lncRNA downstream 146372 13023855 ~ 13024085 (-) True G27063
TU36081 lncRNA downstream 146832 13023199 ~ 13023625 (-) True G27062
XR_005638832.1 lncRNA downstream 184039 12984309 ~ 12986418 (-) True LOC120556265
TU36044 lncRNA downstream 279164 12885852 ~ 12891293 (-) True G27026
TU36042 lncRNA downstream 299529 12870631 ~ 12870928 (-) True G27024
TU36162 lncRNA upstream 77314 13248744 ~ 13249163 (-) True G27133
TU36164 lncRNA upstream 78474 13249904 ~ 13250140 (-) True G27135
XR_005638669.1 lncRNA upstream 207600 13379030 ~ 13391141 (-) True LOC120555270
TU36205 lncRNA upstream 211055 13382485 ~ 13383183 (-) False LOC120555270
TU36213 lncRNA upstream 227573 13399003 ~ 13399374 (-) True G27178
XM_039795896.1 mRNA downstream 677286 12489220 ~ 12493171 (-) True vstm2b
XM_039795187.1 mRNA downstream 991786 12157744 ~ 12178671 (-) True LOC120555959
XM_039795659.1 mRNA downstream 1183530 11980178 ~ 11986927 (-) True ccnd1
XM_039795544.1 mRNA downstream 1373238 11794280 ~ 11797219 (-) True fgf3
XM_039795496.1 mRNA downstream 1386020 11780768 ~ 11784437 (-) True fgf4
XM_039796072.1 mRNA upstream 16984 13188414 ~ 13198636 (-) True rasl12
XM_039795644.1 mRNA upstream 36899 13208329 ~ 13238252 (-) True ubap1lb
XM_039795200.1 mRNA upstream 69256 13240686 ~ 13248416 (-) True pdcd7
XM_039794264.1 mRNA upstream 113811 13285241 ~ 13294261 (-) True LOC120555522
XM_039796044.1 mRNA upstream 230894 13402324 ~ 13406615 (-) True chst1
TU36095 other downstream 74691 13069996 ~ 13095766 (-) True G27075
TU35932 other downstream 865633 12304539 ~ 12304824 (-) True G26924
TU35894 other downstream 1208685 11960701 ~ 11961772 (-) True G26891
TU35842 other downstream 1501188 11643571 ~ 11669269 (-) False LOC120555651
XR_005638741.1 other downstream 1501302 11643231 ~ 11669155 (-) True LOC120555651
XR_005638877.1 other upstream 117780 13289210 ~ 13289264 (-) True LOC120556590
TU36388 other upstream 1298328 14469758 ~ 14470345 (-) True G27321
TU36517 other upstream 1671283 14842713 ~ 14843905 (-) True G27420
XR_005638870.1 other upstream 2468339 15639769 ~ 15639960 (-) True LOC120556584
TU37150 other upstream 4336693 17508123 ~ 17513168 (-) False G27925

Expression Profile