RNA id: XR_005638824.1


Basic Information

Item Value
RNA id XR_005638824.1
length 1297
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id LOC120556202
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 13235235 ~ 13237819 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CatcctgctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccgtttgACTTTTGATTCTTGAACACAGTGAAAGTAGCAGGACCAGACAGTATCAGTGGGCGGGACCTCAAACTGTGTGCTGACCTTTTTAGTCTGTAGAGGACTGAGCACTACTAAGGACAAGGACAGACTGCAGCGTATCATCCGCTCTGCtcagaaggtgattggctgcaatctacCGTCTCTCCAGGACCTGTACGCCTCCAGGACCCTGAGGCGGGCAGGAAAGATTGTAGCCGATCCCTCTCACCCGGGACACAAACAGTTTGAACCCcaccctctggcaggaggctgcggcccatcaggaccaaaacctcatgCCATAAATACAGTTTCTTCCCTTCTGCAGTCAGCCTCACCAACAAGGCAGCCACTGCCCTACCCGTGTGCGTGTAGCAACAGTGACCGAGTCAGACTCAGCTGTCTGAGGGGCGGGGCTCCAGCTGCATGTGGGGGTGCACAGGAAGTTCTCTAACAGGAAGGTTTCCACCGTTTGGCACTGAAACAACCAATCAGCATGATTCCCTCTCTGATGTCATCTGCAGCTTCAAACTGTCCTCTTCCACTAGTCCTCCACACACCACTGAAGAAGAGCTCAGCTGACAACATGAGTAGAAGATAAAGGAACTGTCCAATCGCATACAGTACACCAGGTGTTATTGACTTTGTGCACGCTGAGAAAAGCTGAAAGCTAAATCAGACTTACTTTCCCATAAAGCCTGTCTGCTCACACGCTGGCCTTCTATATTGGTCCAGTGGGTTACACAATGCTGAGATGTGTGTGCagggaacgtgtgtgtgtgtaaaccagAAGGCTTGTATGCTGTGTGATGGGGTGAATCAGGTGTTTAGTGTCCCGAGAAAGCTGATCACATGTTGGATCGTTGAACACCACAACAGCACCAGGCCAGATCTGGGACGTCCCACAGCacagaggacagataagctcaATGTGTTGTCTCTGACGTGCAAAACAGAAGCTGCACAAACAACATGAAACGCTTGTGACCACTCCCTGTTTGGCCCGCACAACTTCACTAATGGAAAGcaacacacagaagacacacacacactagacatTCTTCTCCTCTATCCCCATTTTATACAGCAAGTCCTGCAATAAACCAAACATGTTCcacaaaactaaatgttttcctgaaacaaaaaagaaagctgTATTGTGAACTTAAATAACAATGAATATCCCAAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638794.1 lncRNA upstream 33193 13201417 ~ 13202220 (+) True LOC120556095
TU36105 lncRNA upstream 126223 13108962 ~ 13109190 (+) True G27085
TU36101 lncRNA upstream 138283 13096831 ~ 13097130 (+) True G27081
TU36083 lncRNA upstream 210597 13024501 ~ 13024816 (+) True G27064
TU36046 lncRNA upstream 336226 12898975 ~ 12899187 (+) True G27028
TU36156 lncRNA downstream 9648 13246700 ~ 13248009 (+) False G27129
TU36157 lncRNA downstream 9648 13246700 ~ 13248009 (+) True G27129
TU36196 lncRNA downstream 141994 13379046 ~ 13381280 (+) True G27161
TU36198 lncRNA downstream 154104 13391156 ~ 13391364 (+) True G27163
TU36199 lncRNA downstream 164674 13401726 ~ 13401935 (+) True G27164
XM_039795643.1 mRNA upstream 27078 13204839 ~ 13208335 (+) True kbtbd13
XM_039795868.1 mRNA upstream 59010 13144507 ~ 13176403 (+) True si:cabz01068815.1
XM_039795869.1 mRNA upstream 59010 13161130 ~ 13176403 (+) False si:cabz01068815.1
XM_039796119.1 mRNA upstream 143978 13089535 ~ 13091435 (+) True LOC120556474
XM_039795800.1 mRNA upstream 164081 13065952 ~ 13071332 (+) True LOC120556313
XM_039795202.1 mRNA downstream 15113 13252165 ~ 13271218 (+) True spg21
XM_039795201.1 mRNA downstream 15115 13252167 ~ 13271218 (+) False spg21
XM_039795203.1 mRNA downstream 15526 13252578 ~ 13271218 (+) False spg21
XM_039795669.1 mRNA downstream 434425 13671477 ~ 13676421 (+) False slc35c1
XM_039795668.1 mRNA downstream 435414 13672466 ~ 13676421 (+) True slc35c1
TU36106 other upstream 125074 13109757 ~ 13110339 (+) True G27086
XR_005638880.1 other upstream 1203685 12031621 ~ 12031728 (+) True LOC120556595
TU35313 other upstream 3375413 9847277 ~ 9860000 (+) True aldh1a3
TU35242 other upstream 3630977 9566831 ~ 9604436 (+) False adamts17
TU35121 other upstream 4080070 9068729 ~ 9155343 (+) True G26236
TU36647 other downstream 2204425 15441477 ~ 15446392 (+) False LOC120556433
TU36678 other downstream 2238112 15475164 ~ 15486421 (+) False LOC120556001
XR_005638756.1 other downstream 4487496 17724548 ~ 17742734 (+) True LOC120555788
TU37478 other downstream 5324843 18561895 ~ 18568480 (+) False LOC120556478
TU38013 other downstream 6250194 19487246 ~ 19487533 (+) True G28581

Expression Profile