RNA id: XR_005638669.1


Basic Information

Item Value
RNA id XR_005638669.1
length 4978
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id LOC120555270
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 13379030 ~ 13391141 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gagaggaggaggaggagagaggaagagcaggaaacagacagCTGCACAATCAGTAAGCAGAGGCAGGGTCCATCACAGGGGAAGCTGAGCCAGGGAGCCAAGCTGAGAAAGCACAACCTGCCACATTGACTTAACGGATCAATCCACACCTCGCAGGTGCACCAGATGGGTATCACTTTGACTTTAAAATTCTAGGCTTTATCTGCCAGAGTtggtttatatttgaaaaacaaagcaataattaaatatataatattaaatagataaataaggCAACCTTGATGCAgtatccaagtattcagaaatAACAAGAGGGTGACTATTTCAATTGATGAATCATCCATCCAATGAATAACAAACTCTTGAAGGAAAACATACCCAAAGACATTCACTACTGCCATACTGTTGCCACTTTATCTACACTGTTCACTTCACTTTTTACTTCTTACTTTCACTTCTAACTTTTTTGCTATTTTGTATACTTTGCTCATTTTGGTTTCATTTTTGtatctgtattttttattgtttatttaatttattgtaCTTACATTGTGCACTGCCTAGGAGTTTGACACAACAACATTTTACTATACCTACTTCTGTGTTGTGAGTAAGTATGATATACTGCCTAAACAGCctctcatacatacatgtatatgtGACAAATCTCTTGCACAGGGGATGCACTTTATTAGTAAGTTCTACAGTGATTGCATTTGCTCCTTTACTAGACTGCCCTTCTATACATTTAGTCTAATAGAATAGTAAGTTGTatcaacataaatacatttaaatgaacATTTGTTGTCCTTGATTTTTATATGTTACTTAAAGAAGAACAATATTCAAAATCACTTGAAAACAGGATTTATTGAGTCAGAAAGTATTGTTTGGCTCAGGACAAGTGAATGTTACTACGGACAACTCTGTATGACAACTGTATGTAATTTGATTGATATCTGCACTAAATATGATGAAACTGTTCAGCTTTCTAAACTGTCTGCATATACACATTCTAACAATCTCTACATCCAAACTGCTGACAGTCAATGCTGGTTTCTTGTAAGCATAACGATCacatcctaaccttaaccacgtGCTTATTATCTTAATCATGACAATGGAGGTCCGCTAACCTTAGTGGAGTCATCATTTAAACccaaaacctaaccaaaccttaaCTATAGCTGTGTAAAAATCAGAAAATGGTTATACAACAGTGTTTATTAACCGTTCAGTCAGACAACTCacgtttgaaatgtttattagaACAGCAGAACATTGTGTTTGGCAGCCAGACTCCGACCTCATCACTCCCCGCAGTATAGGTTTACATGAGATATTGGGGAGTGATGATAAAGAATCTTCCCCCTGGCTACTGCAGGTGGATGCTGGGTTGGTGGTGGGGCTAACAGCGGGCAGCGATACAGGTGCAGGGCAGCAGCGGGATTGACAAAGCAGAGATGGGGAAATTGTGCACCTTAAATATGCCGCCAAATGGTGTGTGTTTGGTAAATGATACGGGGAGTGAGGCATGTCACGTGTGTGTACGCAATGCAGCTCGAGTTGGCTGCCTGAACTAGCTCGCAGGCGTTGCCCCATTTTTGAAAGTACTGACAAATGATATTGTTGTGCTGATTAGGGTGTCAGAACAGAAAATGCTTCACTGTGTTGTTCTGAAGGCTAGTTACAAAACTGACCAGATTAATCTGAAACCTAAACTTGAACACTTTGAAGCTTTCAAATACCTAAAATTATGATTTCAACTCATAGTTGCTTTTGATCCTCAGGTGTAGTGAACCACTGGTTTAGAAGTCCAAGGTTTTCTTGCGGCTGAAATCAAGATGCTGTTTTTTAATTTCACCAAATTCTGAACAAATAAAGCCAGCTTTATTTATTCCAGCAATGACTCCTGCAACAACAGTTCTTTGAATTGAATGCTTTTCTAAACTGTCCTCGACCCCTTTACCACATTCATAATTGACAAAGGGACATGGGTGGTCTCTTTACTTGGGtggaaatgtgtttctgtttggTCTTGAACTCATAGTCAAACTGAAGTGCTAGGATACCTTTGGAAACATCCTGTAGGCAGTTATAAACTGCTATTTTGTTACTATTTAGTTCTTCTTTACGTCAGTGAGGTTCCTTGGGAGTGAATCTTTTTAGGTGATATGCAAGGCACATCTTGCCACTGACATATAGGGAATTGGATTTCCCAGCAGAGCCAGGGGCTGCATGTGCTTGACTGCACCCTTCTGGCACCACCCATCACTCTTTTGTAGCTGGAGACCTCCTCTGCCCATCATCCTCTCCTTCTTGCCACTGTATCTGGCCTGATTTTAAAAGATGAAGTTTACCCCGGGGACAGCCCACCCTGCTGGGCAGAAAACGCCTCCCTCTGAGACTGTAAGGAACCACGACTTCTGGTTCCATCTGGTCGAAACCTTTTCTCATTTTCCATGGAGAAGTGGAGCAGCAATACAGATTGCCGTACACTTTAATAGATTGGTTTGAGGAGCATAAAATATGGAACTGTCATTTGATTGCTTCTAATTTGTTCTTGGTTTCTCATTTCTCACTTGTAATTCGTTTCACTCCAGTTACACTGTCATCCCTTTCCTCAATCTGTTCTTCTTATTTTTCAAAGTATGAACTCGACATCacgttttccttttttaatcaTAACtgtatcactctctctctctcttttttctcactcactctctcagtTGTGGTAATAATTCATCTTTTTATGCTTTTTAGACTGTGGATTGTAAGGCTCATGCTGTGCCAAACAGCAGTGCAAttggagagggaaataaaaataGCTTAGCATGTCAGCAGGGGTTTATGATGGCCTCTTTTCCTCAGAGAACTCATATTACGTCCTACCCACATCTTATACACCAGACTAATGCAGCAAAGCCTGCAAAGCTAGTTCAGGATGACAACTTAAGTCATACCAAGTAGATGTTGTTTCAGCATATTGAAAACATTTCTCTCTGTGAGTGTTTCAACCTTCTCGGTACAGCTTGCTATAAAGGCTTCACCCTATTCCTTCATTCAAAAAAGACAATAGCACATAGCTCTACAGTATGCAGCTACATATATTGATGTTAGTCAGATCACAGCCATTTTGGTGTTTCCTCTGGTACAGTACATGCAAACCATGGTAAGCTCCAGTCCAGCCCAGACAATGGTGGTAATGTCCCCCCATCCTTACCTAGAAAACAACCATATGGGTCGATTATGCAACTAGCTGACAATTATTTTCTAGTTAGGCTTTGACCTCTCGTAGCTGAGGGagaggtgacaaagtataagacaAAATCCCATGTTAAACActtggggtggtggatgagtcaaacaaacacaggactttccctAAAGAGACTGGGGTTCATGtcctgtgtgaaaccaaaagtcagcTGTCATTTTGAAATGACCTTAGTCCAGGATGCGATGACATACGTTACGTCACATTACGTCCTCATGTACGTAGTTTTTtgtgaccctaaccctaaccctcataTTAAGACATCCCCTGATGTTTTACTAACACTAACTATTTGGTTGCCTAAACATAACTAGTTCCGTTTCACATTTAcgatgtgtttaaaaaaagtgccCACTACGTTTAAAAGAAAAGTCACATGTTTACAGTTACATGATTAAACCGCCACCATGTGGCAGTAAATAGAACGGCCATATGTGTCATTGAAATTGACCTTGATAATgttgtttaggtatgaggatgtgttTGGTAATGCACCTGAAGCTGCCAAAATCATCAGAGGAAGAAGAATAATGTTTGCTCTTTAACCgtttatttacatttcagctagctagctaactatccataaactaacacaaacacatcagcCATTCGTATAGATGAACTACAAGCGAAAACACATTAATATTACGTTTTATCGTCTTTACTGGCACTCACTAATGCCAGTCCCTCACACATAGCCTACAGACCAGGGCTCTCTGACTCAAACACATTATACTGTGGTTGCACAAATCAAAGATCAGATTAACACAGCAAGTGTAGAACTCTCGGACACCTTTTTATCCCTGTTGCTTTAATGACAAAGGGAGAATAATCTGATTTCAGTGTAATTTCAATGTTACATTAACAGCAGTTTTTAAGGGTCTGTTATCAAGGGATAGATCCTGTAAGTGACTCTGTCCAAAGCACACTTACTGCCATAGTTACACTTCAGATGAGTAAAGAAAGAAATCACAAATCATAATTTAAACCATACGGCTACATTGTATCGAGGTGGTCACTCAAAACATTTCTCTCTGGGCCAAAAGTTTAGGTAGATTGTCATCTCTTTAAGCTGTAACTTGTTCCAGCACAACATCATGTAATGAAGAGGGTCACCCTGTTTGGCTTCAATATAATGTTTTGCCACAGAAACAGATTAGCATGGGAATTACTTTTGTACACAATTGTATTATGCCATTATGCATTGTGCCATACTGTAAGTGGTTGTTGTGTATTTAGTTGGATGGACCAACTAATCACTTGGATTTAATAATGACTTTTCATTTAAAGCTCTTCCTCCAGGCTGCTTTAGAGTCATACACCCAACCATAACCATATTCAGAGTGCAAGGTAAGCTTGAGGGAGCCCATTACGAGATTAAACCAAGTATTTTCCTAATAGGGCCTTaaactttgttttctttgtgtgcCTACATTTGAACTTTGTGTACAGAGTTGGTTCTTTaagatgttgtgtttttagaATGAGAGTTGATGTTATGTTTGCCTGTATTCTTTTGATAAAAaagtgtgtgctgtgtattaTTGTTCACTGCAGTAACAGAAGCTGGCACCTCTCCTCCACACCTGGGGATGCGTATTCTCTCTAAAGGGAGGAGGATAGGATAGGATATTGTGGTGCTTTGATGAAGGCTTTTGTCGAAAAGCAtgggtataaaaaaataaaatggtaaCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36164 lncRNA downstream 128890 13249904 ~ 13250140 (-) True G27135
TU36162 lncRNA downstream 129867 13248744 ~ 13249163 (-) True G27133
TU36128 lncRNA downstream 207600 13170457 ~ 13171430 (-) True G27108
TU36082 lncRNA downstream 354945 13023855 ~ 13024085 (-) True G27063
TU36081 lncRNA downstream 355405 13023199 ~ 13023625 (-) True G27062
TU36213 lncRNA upstream 7862 13399003 ~ 13399374 (-) True G27178
TU36224 lncRNA upstream 229422 13620563 ~ 13620851 (-) True G27189
TU36237 lncRNA upstream 284831 13675972 ~ 13676503 (-) True G27196
TU36238 lncRNA upstream 284831 13675972 ~ 13676456 (-) False G27196
TU36249 lncRNA upstream 296700 13687841 ~ 13688228 (-) True G27204
XM_039794264.1 mRNA downstream 84769 13285241 ~ 13294261 (-) True LOC120555522
XM_039795200.1 mRNA downstream 130614 13240686 ~ 13248416 (-) True pdcd7
XM_039795644.1 mRNA downstream 140778 13208329 ~ 13238252 (-) True ubap1lb
XM_039796072.1 mRNA downstream 180394 13188414 ~ 13198636 (-) True rasl12
XM_039795896.1 mRNA downstream 885859 12489220 ~ 12493171 (-) True vstm2b
XM_039796044.1 mRNA upstream 11183 13402324 ~ 13406615 (-) True chst1
XM_039794263.1 mRNA upstream 332452 13723593 ~ 13727470 (-) True LOC120555520
XM_039795130.1 mRNA upstream 576573 13967714 ~ 13995315 (-) True hsd17b12b
XM_039795129.1 mRNA upstream 576573 13967714 ~ 13995313 (-) False hsd17b12b
XM_039794845.1 mRNA upstream 626411 14017552 ~ 14048294 (-) False ttc17
XR_005638877.1 other downstream 89766 13289210 ~ 13289264 (-) True LOC120556590
TU36095 other downstream 283264 13069996 ~ 13095766 (-) True G27075
TU35932 other downstream 1074206 12304539 ~ 12304824 (-) True G26924
TU35894 other downstream 1417258 11960701 ~ 11961772 (-) True G26891
TU35842 other downstream 1709761 11643571 ~ 11669269 (-) False LOC120555651
TU36388 other upstream 1078617 14469758 ~ 14470345 (-) True G27321
TU36517 other upstream 1451572 14842713 ~ 14843905 (-) True G27420
XR_005638870.1 other upstream 2248628 15639769 ~ 15639960 (-) True LOC120556584
TU37150 other upstream 4116982 17508123 ~ 17513168 (-) False G27925
TU37147 other upstream 4118809 17509950 ~ 17513168 (-) False G27925

Expression Profile