RNA id: XM_039795669.1


Basic Information

Item Value
RNA id XM_039795669.1
length 1882
RNA type mRNA
GC content 0.45
exon number 3
gene id slc35c1
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 13671477 ~ 13676613 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACAGAGGTAAAAAGACAAGACATTTCCTTGTAGACATTCTCCATGCTGGACTCAAATATAGAGCAACCTCCGACAACATAAGGACACAGCTGAAGCGGTCCAGTATATTGAGGATGGCTCTAGCCGGTTCGGAAACAATGGACGGACATGGAGAGACTTTCATATTCCGTGCTGTCAGAATAGGTGCTGTGGTTGCACTGTACTGGTTCATTTCAATAACTATGGTGTTCCTTAATAATTACCTGCTGGACAACCGAGACCTGGACGCGCCGTTATTTGTTACTTTCTATCAGTGTTTGGTGACTGTCGGACTGTGCTGGCTCATGCAGCTGCTGTCCAAGTTGTGCCCGGGACTCATCGACTTCCCCTCGGTCAAACTCGACGTGAAGACGTCACGAGAGGTCCTGCCGCTGTCCATTGTGTTCATTGCCATGATCACCTTCAACAACCTGTGCCTGAAACATGTCGGTGTGGCTTTCTACACGGTCGGTCGTTCACTCAGCACAGTGTTTAATGTGCTGTTATCGTACGTTATCCTAAAACAAACCACGTCATACCAAGCCATACTGTGCTGTGGGATCATTCTAGGTGGATTCTGGCTTGGTGTGGACCAGGAAGGCGTGGCAGGGTCCCTCTCCTGGTCAGGTGTCTTCTTTGGGGTGGTGGCCAGCGCTTGTGTCTCTCTAAACGCCATCTACACCAAGAAGGTGATGCCAGCGGTGGACGGCAACATCTGGAAACTCTCCTACTACAACAACATTAATGCCTGCGTCCTCTTCCTCCCACTCATTCTCGTGTTTGGAGAGTTGGGCAATCTCGCCCACTTCAGCCTCCTGACTGACGTCAGGTTTTGGGGCATGATGACGCTCGGAGGAGTGTTTGGTTTCGCCATTGGCTACGTCACAGGCCTCCAGATCAAGTATACCAGTCCACTCACGCACAACGTCTCGGGGACAGCAAAGGCCTGTGCGCAGACTGTTATCGCGGTTGTGTACAACTCTTCCAGTAAAAGCCTGCTGTGGTGGACCAGTAACCTGTTGGTTCTTTGTGGCTCGTCAGCCTACACTTGGGTCAAAAGTCTAGAAATGAAGAAGCCTTCTCCTCACAGAGACCCTCCGGACTCAGCCAAGGAAAAACTGCTGCCAGGGGAAAAAGGCAGCTTGGGAGTGTAACGGTTGTAACTAGGCTGagaaactttctttttttttttttatacgtgGGGTGAGAGTATGaaataatgtaatatttagGACATGACTGATTAATGTTTGAGGTGATTATGCACACATGGAATCAGTGATTTTGGTTAGGTTTAATAGTCTTTGGGTTTTATACAGTTGCACTTGAAGCCTGAAgaaatttttatatatatatatatatatatatataattttttttttttatttaaagctatTCACATGCATTTGGGGCAGTGTAACAATTCTTTTAAAATGAGATGACTAAGTAATATAATAATGTGTCTTTTATGGTCCAGTCTACATGTCTAAgtgaagaaaacaaaatcatgtttttattcataGGCAGGGTTTTTCCAACATAGAGACATTTTTGGCGCCCCTCCTCCCCAAAGAGGTTTCAGCCAGAtccaaaggaaaatcaccagcacAAAAACATCGGGAGGAGTAGACGCTGCTGATATAGTGGCATCAGTATTGAATTGAGACATATTTATAACTGGATAtggttgggtttttttttcaagagGACTTGGGCACCCACCAACTCTGCCCGGGTACAGTACGAAGTGTTCAAACTTTTGGCATCAAGTGAACTCGGATATGGGCCCAGATCCCTGATGTAAAATAACCCTTATTACATTATATTCCAttgtatttcattatattttgaattgtcacctGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36225 lncRNA upstream 19982 13650883 ~ 13651495 (+) True G27190
TU36214 lncRNA upstream 253323 13417937 ~ 13418154 (+) True G27179
TU36199 lncRNA upstream 269542 13401726 ~ 13401935 (+) True G27164
TU36198 lncRNA upstream 280113 13391156 ~ 13391364 (+) True G27163
TU36196 lncRNA upstream 290197 13379046 ~ 13381280 (+) True G27161
TU36269 lncRNA downstream 60762 13737183 ~ 13744451 (+) True G27220
TU36287 lncRNA downstream 175646 13852067 ~ 13854431 (+) False lrrc4cb
TU36293 lncRNA downstream 251778 13928199 ~ 13936728 (+) True G27241
TU36294 lncRNA downstream 251778 13928199 ~ 13936728 (+) False G27241
TU36310 lncRNA downstream 320692 13997113 ~ 14001647 (+) True LOC120555409
XM_039795202.1 mRNA upstream 400259 13252165 ~ 13271218 (+) True spg21
XM_039795201.1 mRNA upstream 400259 13252167 ~ 13271218 (+) False spg21
XM_039795203.1 mRNA upstream 400259 13252578 ~ 13271218 (+) False spg21
XM_039795643.1 mRNA upstream 463142 13204839 ~ 13208335 (+) True kbtbd13
XM_039795868.1 mRNA upstream 495074 13144507 ~ 13176403 (+) True si:cabz01068815.1
XM_039795666.1 mRNA downstream 1711 13678132 ~ 13696767 (+) True si:ch211-102l7.3
XM_039795667.1 mRNA downstream 1711 13678132 ~ 13696767 (+) False si:ch211-102l7.3
XM_039795795.1 mRNA downstream 21225 13697646 ~ 13723065 (+) False slc1a2a
XM_039795794.1 mRNA downstream 32448 13708869 ~ 13723065 (+) True slc1a2a
XM_039795796.1 mRNA downstream 32449 13708870 ~ 13723065 (+) False slc1a2a
TU36145 other upstream 433658 13235235 ~ 13237819 (+) True LOC120556202
TU36106 other upstream 561138 13109757 ~ 13110339 (+) True G27086
XR_005638880.1 other upstream 1639749 12031621 ~ 12031728 (+) True LOC120556595
TU35313 other upstream 3811477 9847277 ~ 9860000 (+) True aldh1a3
TU35242 other upstream 4067041 9566831 ~ 9604436 (+) False adamts17
TU36647 other downstream 1765056 15441477 ~ 15446392 (+) False LOC120556433
TU36678 other downstream 1798743 15475164 ~ 15486421 (+) False LOC120556001
XR_005638756.1 other downstream 4048127 17724548 ~ 17742734 (+) True LOC120555788
TU37478 other downstream 4885474 18561895 ~ 18568480 (+) False LOC120556478
TU38013 other downstream 5810825 19487246 ~ 19487533 (+) True G28581

Expression Profile