RNA id: TU36269



Basic Information


Item Value
RNA id TU36269
length 236
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G27220
representative True

Chromosome Information


Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 13737183 ~ 13744451 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GCCTCAGCATAGTATGTGACTACAAATCCCATCCGGCAATGTATCCTGTTTGGATGTCGCATATTGATGACGTGGTGTTAGCAGATTTTGGGttagataacgttagctgttTTGGCATCGTATATTTTAACCACAGACTGACTTCACGGCATAAGTAAGAGTGCATTTCTCAAGGtgtgtctccctctcccttccCAAACAAAGAAGCGTGGATCTCGCTCAATAGTCCCTCCCGG

Function


GO:

id name namespace
GO:0070035 obsolete purine NTP-dependent helicase activity molecular_function
GO:0003678 DNA helicase activity molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
ko03460 Fanconi anemia pathway

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU36229 lncRNA upstream 60570 13675954 ~ 13676613 (+) False slc35c1
TU36225 lncRNA upstream 85688 13650883 ~ 13651495 (+) True G27190
TU36214 lncRNA upstream 319029 13417937 ~ 13418154 (+) True G27179
TU36199 lncRNA upstream 335248 13401726 ~ 13401935 (+) True G27164
TU36198 lncRNA upstream 345819 13391156 ~ 13391364 (+) True G27163
TU36287 lncRNA downstream 107616 13852067 ~ 13854431 (+) False lrrc4cb
TU36293 lncRNA downstream 183748 13928199 ~ 13936728 (+) True G27241
TU36294 lncRNA downstream 183748 13928199 ~ 13936728 (+) False G27241
TU36310 lncRNA downstream 252662 13997113 ~ 14001647 (+) True LOC120555409
XR_005638709.1 lncRNA downstream 255084 13999535 ~ 14001434 (+) False LOC120555409
XM_039795795.1 mRNA upstream 14118 13697646 ~ 13723065 (+) False slc1a2a
XM_039795794.1 mRNA upstream 14118 13708869 ~ 13723065 (+) True slc1a2a
XM_039795796.1 mRNA upstream 14118 13708870 ~ 13723065 (+) False slc1a2a
XM_039795666.1 mRNA upstream 40416 13678132 ~ 13696767 (+) True si:ch211-102l7.3
XM_039795667.1 mRNA upstream 40416 13678132 ~ 13696767 (+) False si:ch211-102l7.3
XM_039795716.1 mRNA downstream 5965 13750416 ~ 13765627 (+) True LOC120556255
XM_039796070.1 mRNA downstream 65484 13809935 ~ 13856423 (+) True lrrc4cb
XM_039796071.1 mRNA downstream 103609 13848060 ~ 13856423 (+) False lrrc4cb
XM_039794847.1 mRNA downstream 303840 14048291 ~ 14055494 (+) False traf6
XM_039794848.1 mRNA downstream 303919 14048370 ~ 14055494 (+) False traf6
TU36145 other upstream 499364 13235235 ~ 13237819 (+) True LOC120556202
TU36106 other upstream 626844 13109757 ~ 13110339 (+) True G27086
XR_005638880.1 other upstream 1705455 12031621 ~ 12031728 (+) True LOC120556595
TU35313 other upstream 3877183 9847277 ~ 9860000 (+) True aldh1a3
TU35242 other upstream 4132747 9566831 ~ 9604436 (+) False adamts17
TU36647 other downstream 1697026 15441477 ~ 15446392 (+) False LOC120556433
TU36678 other downstream 1730713 15475164 ~ 15486421 (+) False LOC120556001
XR_005638756.1 other downstream 3980097 17724548 ~ 17742734 (+) True LOC120555788
TU37478 other downstream 4817444 18561895 ~ 18568480 (+) False LOC120556478
TU38013 other downstream 5742795 19487246 ~ 19487533 (+) True G28581

Expression Profile