RNA id: TU36279



Basic Information


Item Value
RNA id TU36279
length 369
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G27230
representative True

Chromosome Information


Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 13753706 ~ 13754074 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


cctctcccttgtttttgtcttgtctGTCATGTGCTGTGTGGGTGTGGCGCTCCTggttttctctccctcctcgtcAGGACACCTGTGGCTTCCTGCTCACCTGAATCATATCCAGCAATCACCACTCCTGTCTTAAACCCCGGCCTTCCAACCAGTCTCTGCCAGATCGTCCGTTCACCCAAGTGGTAACACTCGCTACAGCCAGCTTCAGTGTTTTTGAAAGACTGCCTTTTTGTATTCCTGTTGCAAgccttgttttgactttttgtgttttcttttgtgtcCAGATTCTTGCTTCAGCCCTGGAAGCCCAGTCTGCCTGCCTGAGCCgacttgttgttttttgttggacCTGCCTATCACCTGTCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU36260 lncRNA downstream 33110 13719198 ~ 13720596 (-) True G27211
TU36258 lncRNA downstream 41438 13708919 ~ 13712268 (-) True G27210
TU36253 lncRNA downstream 56873 13695578 ~ 13696833 (-) True G27208
TU36251 lncRNA downstream 59458 13693745 ~ 13694248 (-) True G27206
TU36250 lncRNA downstream 64109 13689282 ~ 13689597 (-) True G27205
TU36332 lncRNA upstream 243039 13997113 ~ 14004611 (-) True G27277
TU36334 lncRNA upstream 247776 14001850 ~ 14002747 (-) True G27279
TU36357 lncRNA upstream 413483 14167557 ~ 14167758 (-) True G27295
TU36359 lncRNA upstream 415539 14169613 ~ 14169839 (-) True G27297
TU36363 lncRNA upstream 426053 14180127 ~ 14180348 (-) True G27301
XM_039794263.1 mRNA downstream 26236 13723593 ~ 13727470 (-) True LOC120555520
XM_039796044.1 mRNA downstream 347091 13402324 ~ 13406615 (-) True chst1
XM_039794264.1 mRNA downstream 459445 13285241 ~ 13294261 (-) True LOC120555522
XM_039795200.1 mRNA downstream 505290 13240686 ~ 13248416 (-) True pdcd7
XM_039795644.1 mRNA downstream 515454 13208329 ~ 13238252 (-) True ubap1lb
XM_039795130.1 mRNA upstream 213640 13967714 ~ 13995315 (-) True hsd17b12b
XM_039795129.1 mRNA upstream 213640 13967714 ~ 13995313 (-) False hsd17b12b
XM_039794845.1 mRNA upstream 263478 14017552 ~ 14048294 (-) False ttc17
XM_039794844.1 mRNA upstream 263478 14017552 ~ 14048293 (-) True ttc17
XM_039794175.1 mRNA upstream 307962 14062036 ~ 14090460 (-) True trpm5
XR_005638877.1 other downstream 464442 13289210 ~ 13289264 (-) True LOC120556590
TU36095 other downstream 657940 13069996 ~ 13095766 (-) True G27075
TU35932 other downstream 1448882 12304539 ~ 12304824 (-) True G26924
TU35894 other downstream 1791934 11960701 ~ 11961772 (-) True G26891
TU35842 other downstream 2084437 11643571 ~ 11669269 (-) False LOC120555651
TU36388 other upstream 715684 14469758 ~ 14470345 (-) True G27321
TU36517 other upstream 1088639 14842713 ~ 14843905 (-) True G27420
XR_005638870.1 other upstream 1885695 15639769 ~ 15639960 (-) True LOC120556584
TU37150 other upstream 3754049 17508123 ~ 17513168 (-) False G27925
TU37147 other upstream 3755876 17509950 ~ 17513168 (-) False G27925

Expression Profile