RNA id: TU36287


Basic Information

Item Value
RNA id TU36287
length 2296
lncRNA type sense_over
GC content 0.41
exon number 2
gene id lrrc4cb
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 13809935 ~ 13856423 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACCAAGTCCAATTTGGCAGAGGTTTATAAcgacaaaagaaaaaatgggTTTATTTTCATTGCCATCATATTCTAACTGTCACTCATCACAAAATGAGATCTCTTTAATGACACAGCTCTGGGTGATATCACAGTGAAGCCAGCATGCCCGAGGAGCAAAGCAGTCAAAAAGAGTAGCTGTGCATTTCCCCTGTGGCTCCTGAACAACAACCATACATCCTTCACTTTAATTAAGATTAAGTTCTTGCTCCCACTCCTCCTCCTACCTTTTCTTCACACTTCAACCTTTACTACTTCTCTCctactcctcctctcttcttcttcctccatgtCTGAGTTCTCCATCTTCCCTGTCaaccctctctgctctctccccACTCTCATTTTCCTCCATGTCCTCTTGCTTCTTTGattgtctctctgtcacttagCTCAGGCACGTTTCTCACCCCCTCGCCATGTCTCATTTGTCTCGCTTTATCCGCCGGCATGTGCCGCACGACGGCAGAATATTGCTTGGGAAAATGAAGGGGAGCATAAGGCTGCAGTCTGTAGCCTCCCTGTTAACCCAGTAATGATCTACGTCCACTCAGTGTCCCGTTACCTTGCCATCACCCCAGGGTCACACGAGCTTGGGCGCTGATAGTCCATCTGTTATACACATGAAGAGGCAAATGAGGCTGCTTTGTAATGTAGTGTGACCCTGTCAGACGAACGCAGACGGGGCTAACATAGTCAGTGAGGCAGCTAGGAACTTGCAACAAAATAAGGGGAGATGGGTTATAGCTCATTAATCTGTATCAGCAATTCATTTGCAGACTAACAGAGGAAAGCTGATAACAAAACAGCGTGAGACTTTTCCACTATCCCTGTGCCAAACATCTAACAGAGGGTGGAGGCCTTTGATATTGAAGCGACCCCTGCTCAgtctcattttttttgtcacagaaaaacacacacacactttgatgtTGCATCCTGTATAGACCATGAAAACATTGTCTCTCCTCTAGTCTGTTTACACTTTGATTTTTCATTTAGTCTTTCAAAGAGGACGGCTTAAGGAGGAAGGAGGTAGGGATGAAAAGTGAAGAACAGTTGGTGGGGAGGCGGGAGCCAGAGCCACAACAGTCATGAGGGGTCTTCAAACAGATATATTGCAGATATGAAGGGAGTGGagtgaaaaaaaagataagGAGGCAAAACTAGCCATCACACTGTCGCCATGGAAACAGTGACCTTGTGCAGAAAGTAAAAAGAGGTAGATATGCCTTTTGCTTTGGTCTCTGTGCAACAAGCATATTTTAATTTCCCACAGGCGATTTCACAAATGCGACAGGTTATCGCCAAATCTGACATAATGGAATCTGTATTTACAAATGGTTTTGATGGGATTTGACCCTGCACACGACGTCACCTTTGCAGAGCAACGCACTGTTTCAgttattttaatgaaatatCGCTGCATGATGTGAAAATTTCAGTAGCTCTATTCGCCTTATTAACTTTCCTCTCAGTCAAGACAGCTTCCATGGGTTATAGTATGAGTCTAATAAAGCACTGTCACACAAATTCATATTCTTCTTATCAGTCAGTCTCCTAAATGTATTCttttatacaatacaataacggTGGTATGGTGGAAGCAAAATATACATTTAAGGACCGGCCTTGTCAGTGGAGGTGGTAGAGACATTTGAAACTGTAAGTGGAAAAGGAACAATTGAAAGCTATTCATGCCTTTCATTGAGTGTTACGAATGACGAGACTAGTACCGTTAATGGTAACATCATAGAGTGAACCATTCTTTCCCTTTccactgttttctttttcaatgcTCAATTCCTTTTCAATGCTTTTGGTGGCTTAATGATTCAATGTTAATGCTggctacagtaaaaaaaaaaagaaaaaaaaagagttttttttttatatatatatatatggggatGATGGTTGTCAGTTATTCAGAATGAATGGAATACAGTATCTCTGTATTGGTATTTGCTTGAGCAGGATGGCTTTATGTGGAGAGATATCTGAATGCCAGAATGAAATTACAGTAAGACTGACCTGCAGAATGTTGGACTTGAAATACCAGCAGAGTGAGCTTGATTTTTGTGCAAAACCCCAAGCCAAGGTGATCAAATTGGTGTGTGTTATTCTGCCAACTGTCTATGTATAGAGAGggttactgtatgtgtgaataTTCTCTCTCATTTTTGGAGAGAATAATCATCAAATGGTTAAatttctacaaaaaaaaaatattttcaaaaacataatgcaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36269 lncRNA upstream 107616 13737183 ~ 13744451 (+) True G27220
TU36229 lncRNA upstream 175454 13675954 ~ 13676613 (+) False slc35c1
TU36225 lncRNA upstream 200572 13650883 ~ 13651495 (+) True G27190
TU36214 lncRNA upstream 433913 13417937 ~ 13418154 (+) True G27179
TU36199 lncRNA upstream 450132 13401726 ~ 13401935 (+) True G27164
TU36293 lncRNA downstream 73768 13928199 ~ 13936728 (+) True G27241
TU36294 lncRNA downstream 73768 13928199 ~ 13936728 (+) False G27241
TU36310 lncRNA downstream 142682 13997113 ~ 14001647 (+) True LOC120555409
XR_005638709.1 lncRNA downstream 145104 13999535 ~ 14001434 (+) False LOC120555409
TU36368 lncRNA downstream 368878 14223309 ~ 14224234 (+) True G27306
XM_039795716.1 mRNA upstream 86440 13750416 ~ 13765627 (+) True LOC120556255
XM_039795795.1 mRNA upstream 129002 13697646 ~ 13723065 (+) False slc1a2a
XM_039795794.1 mRNA upstream 129002 13708869 ~ 13723065 (+) True slc1a2a
XM_039795796.1 mRNA upstream 129002 13708870 ~ 13723065 (+) False slc1a2a
XM_039795666.1 mRNA upstream 155300 13678132 ~ 13696767 (+) True si:ch211-102l7.3
XM_039794847.1 mRNA downstream 193860 14048291 ~ 14055494 (+) False traf6
XM_039794848.1 mRNA downstream 193939 14048370 ~ 14055494 (+) False traf6
XM_039794849.1 mRNA downstream 194125 14048556 ~ 14055494 (+) True traf6
XM_039795637.1 mRNA downstream 238433 14092864 ~ 14094321 (+) True cdkn1ca
XM_039795756.1 mRNA downstream 428728 14283159 ~ 14463293 (+) True luzp2
TU36145 other upstream 614248 13235235 ~ 13237819 (+) True LOC120556202
TU36106 other upstream 741728 13109757 ~ 13110339 (+) True G27086
XR_005638880.1 other upstream 1820339 12031621 ~ 12031728 (+) True LOC120556595
TU35313 other upstream 3992067 9847277 ~ 9860000 (+) True aldh1a3
TU35242 other upstream 4247631 9566831 ~ 9604436 (+) False adamts17
TU36647 other downstream 1587046 15441477 ~ 15446392 (+) False LOC120556433
TU36678 other downstream 1620733 15475164 ~ 15486421 (+) False LOC120556001
XR_005638756.1 other downstream 3870117 17724548 ~ 17742734 (+) True LOC120555788
TU37478 other downstream 4707464 18561895 ~ 18568480 (+) False LOC120556478
TU38013 other downstream 5632815 19487246 ~ 19487533 (+) True G28581

Expression Profile