RNA id: TU36310


Basic Information

Item Value
RNA id TU36310
length 3875
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id LOC120555409
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 13997113 ~ 14001647 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctgcTGTATAGAAATGGTTAAAAGCATCATTAATATTGAAACATACATAATCTACAAAGGTGAATATACCAGTAAACCCATTCAGTCTTTCTTAAAGTTaggctttctttttttaaatctatgtaTGCACATTTTCAATTAGTCCATAGACATTATGACATATTTGaacaaagaagagaaaagatatgacaaaataagacaaaatcAGATCAAATATAAAATTATGTTATGTTAATTATAACAAATAGGGAGACAAAAAAGCACACATGAAGAGAGGGATTAAAGTGTAAGGTAAAaagtaacagacacacacacacacacacacagtgtgtcttGTCTCACTTTTTCATCTGTTGTTAAATTGAGAAAAAGACCACAAATCAATTATTCAAGGGAAAATGGAGAGTTGAGCTAAATGGCATATTTAAAAGAGTTTTAAATGTTGATCAATTTGCTTTTGGAGCCTAACCACTTATGTGTACCTGGTTGTTTTCCAGTTCAAGATAGTTGAACATTTCCTTCACCTATAGAGCGTGAGAAGAAATGGTCGCAGCTTTTCATTTAGTTCAGTGCATGTCTGGCTGATTAAATGGCTGCTCGGTGTCCATCTGATAACTATACTGCTGTATTTTACAAATAATTGTGAAAACATTCTCTCTTTCTATTGCTCCTTcccttacacacatacacacacacacacacacacacacacacacacacatatatatatacagtatatacacacacagacacacttctgCAAAAGTAACACTATAACATGAATGGGCATTAATTCCCTATACACATCTTTCTCTGTGCGTCTTGCCTTTTAAATAAAGATTGCACACATAGTCATAGCTGTGATACATAACAGTGATACTGTTGTCACAGCAGAAAAAATAAAGGACAAAGTCAAAGAAAAACTAAGAGATGGCACATCCTACAGTAATACATTTAGAAATGTCCATGCAAGGTTTCTTTCTTGTTTAATGTCCCGTCCCAAACACTTCCATCACATTACGTACAGGACATGATTTACACGACAAGGACAAACACAGTATGTcccataatatatataataatgacACATAACAcgtgaaaaagaaaatcacacaaacacacacacacacaaacacacaacttcTTTAGTCCCTGGATCTGAACtctttacatttatatatcatTTTAGTGTTCCTAATATTTCTCTAAAATAGGAATTATATTGGTCAAATATGTAAAGACTTTTTAAATGTGGTTGTCTTTCACTGTAGACATCACATCATCTTTCCACTATTGCTGCATTTTTTATCAAGTTATTGTCACCAACCCCACACCTCTCAAAACAGAGAACTGTACAGAAACAGACTGTTcggaccagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaactgtaagTACTTCTCCTTCAAGCAGGTGAGCTGATTAAAAAAGCTGTCCTGGAGGGGAAATCACAGGGAGAGGGAGGCTTTAACACATTTGCACTGTACCCGAAGCAGGAGCTCCCTGCTTCGTGAGCTGCTACACTTCTCTACTggagctggggggggggggggcttattGCTCATGGGCGTGAGACCTGAGACCACAGGACCCTAGGTTTGGGGCCCCTGAGCCAGATCTCCTGTGTGAAGTGACTCTCATAAAAATATTTCACATCGCAAATTTTAAAGGATCAGTTATTGAAGTCAGATTACAAAAACAAAGCACATTTGTAAAACCAAAGGAAAAGCTTAAACATTCACAAGGAAGTATCATTCATCACCTTAGGCTTTTCTGAAGGACGTTCAGGTCTAGTGAACTATTTGAACTGAGTACTTTTTCAACTGCGTGGAGATTTTGACTGAACAACCGATTTTCACATGGCAGTCAAAGTTGCTAAGCGTGCTGCCAGTGTTCGCACATTGAAGTATTATGAATGATTTTCAACACAATGTGTGATTAACACTTTCTACTTGTTTTAGTGTGtgtaaatgggtgaatgagaggcagattgtaaagcgctttgtctataaatgcagtccatttgcCATTTACAGTAGTACTgaactagcctggtcctaccagactctgctacatttcatttgtacagagaatctgtccactctccattgacaagggTTAACTTCCTTGagggcgggtactctgttgaagtttaaaactattggatctgccaagagccactctggatctgccataaccaatcgctaacaaTCGCATGACAAtcgtatgtcatgcgcatgtgcaacaagaggggagaccgacaactatcggcttatatttagcattagcatcgctagtgttagccttagccaactccttcaccactaacagagCGAGCTGGAcaatctaacttttcccgaacccccgTGGGGAGAaggggccacaacatcatgtccaccaacaaaactcagcaaagattgttcttgctcgggcttttgCTTCTGGATGTTCGGCAGCGTTgctgccacaacggaccgaatggcttcgctcgcatctttctagcgCACGTCTTCAACTTCGTCgatctcagccactccctctgttcgctgattggactgcCAAATATTTGAAaaccggagaaaacccaagaatataccgcaaacccagacggagtactgaagggaaatgaaaattgagcggaagtacgtaggagggcggagtgAGTTTTCCCCACTCACTCGGTGGATTCATCCTGCGGCCCCCACTTTGGTTTGGTCAGTGCTCCCGTCTCCCGGCGTAGTGTGTGCGTGATGTGTAGACGGCCTGCGAGTTCAAAAGccataaacaaaaacaataaagataatatgAGAAAGCGGAAGCAAATATATCGTCCATATTGCTTACAACCGTTCCTGATCCAGAAGGGAAAGTGATGTGACATTGGCATACATTACATTGTGAGTTAAATGGGAAAATGTACCGCAAAATGAAGAAGACACTCAAAACATTGAGAAcatccatatatacagtagtatGCTTCGAATGTGATAAAATAGGAATTCTTGCGCTTTTGAATTTGCATTTTGTTGACTGTTGATTAGGTTCACAAAAGCATACAGaggtgtatttaaaaaaaaaaagccaaatatttaaattacaagaaaatttgaaaaacatGTAAGTGCACCTCAGGTTTCTGCAGTGGTGATTTGTAGTACATCATGTGTTTGTATGACATCTATGCAGAAACGCCCCAAAATCCTGATTTAAGGTATATTTAAGTAACTTAAAAATGACTGAATCTGTGACATTGTTGAGAAACTGCTTTGAATATAATGCCTTAATAACTATTTCgaataaaagcaacaaaaaaatccCCACAGCTGATTCATCTTCATCTCTGTGACAGCTGTCAGTCTAGCTGTCCCAGATGTTTAGTCAGCAGAAATGTAAGAATCAAAACAACACGTTGCTAAAATAAAAGCTTCACCGTAGAACGTCGCATTTTCATCTGCTCACAAACAAGAagctgtaaaaaataaacatcacaTAAGAAGGCATTAGCAGGCATGTCCAGAGAACAAATTCTGATGAAGATGATGTAATTCTGATGCAAAATAATGACtcaataaaaaactatttttgtttAGTCTAATAATGCATACATTCCTACTGTGTTGTGAAAAATCCTCCACATCTGTTGCTCTTTTAAACATGTTCGTTTATAGCACAACAGAAACCAACGCTGTGCATAATGGTGCATCACAAGTGTAACACCAAACAATCCAGTGGACTGCTGAATGAGTGTACACTGCTGTTGGAGGTAGGAGATGGTGTagtttttgaatttgaatttgtttgttttgca

Function

GO: NA

KEGG:

id description
ko04020 Calcium signaling pathway
ko04723 Retrograde endocannabinoid signaling
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36293 lncRNA upstream 60385 13928199 ~ 13936728 (+) True G27241
TU36294 lncRNA upstream 60385 13928199 ~ 13936728 (+) False G27241
TU36287 lncRNA upstream 142682 13852067 ~ 13854431 (+) False lrrc4cb
TU36269 lncRNA upstream 252662 13737183 ~ 13744451 (+) True G27220
TU36229 lncRNA upstream 320500 13675954 ~ 13676613 (+) False slc35c1
TU36368 lncRNA downstream 221662 14223309 ~ 14224234 (+) True G27306
TU36387 lncRNA downstream 464831 14466478 ~ 14466680 (+) True G27320
XR_005638843.1 lncRNA downstream 572550 14574197 ~ 14577703 (+) True LOC120556358
TU36395 lncRNA downstream 574796 14576443 ~ 14577250 (+) False LOC120556358
TU36427 lncRNA downstream 682186 14683833 ~ 14684116 (+) True G27356
XM_039796070.1 mRNA upstream 140690 13809935 ~ 13856423 (+) True lrrc4cb
XM_039796071.1 mRNA upstream 140690 13848060 ~ 13856423 (+) False lrrc4cb
XM_039795716.1 mRNA upstream 231486 13750416 ~ 13765627 (+) True LOC120556255
XM_039795794.1 mRNA upstream 274048 13708869 ~ 13723065 (+) True slc1a2a
XM_039794847.1 mRNA downstream 46644 14048291 ~ 14055494 (+) False traf6
XM_039794848.1 mRNA downstream 46723 14048370 ~ 14055494 (+) False traf6
XM_039794849.1 mRNA downstream 46909 14048556 ~ 14055494 (+) True traf6
XM_039795637.1 mRNA downstream 91217 14092864 ~ 14094321 (+) True cdkn1ca
XM_039795756.1 mRNA downstream 281512 14283159 ~ 14463293 (+) True luzp2
TU36145 other upstream 759294 13235235 ~ 13237819 (+) True LOC120556202
TU36106 other upstream 886774 13109757 ~ 13110339 (+) True G27086
XR_005638880.1 other upstream 1965385 12031621 ~ 12031728 (+) True LOC120556595
TU35313 other upstream 4137113 9847277 ~ 9860000 (+) True aldh1a3
TU35242 other upstream 4392677 9566831 ~ 9604436 (+) False adamts17
TU36647 other downstream 1439830 15441477 ~ 15446392 (+) False LOC120556433
TU36678 other downstream 1473517 15475164 ~ 15486421 (+) False LOC120556001
XR_005638756.1 other downstream 3722901 17724548 ~ 17742734 (+) True LOC120555788
TU37478 other downstream 4560248 18561895 ~ 18568480 (+) False LOC120556478
TU38013 other downstream 5485599 19487246 ~ 19487533 (+) True G28581

Expression Profile