RNA id: TU36332


Basic Information

Item Value
RNA id TU36332
length 3662
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G27277
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 13997113 ~ 14004611 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGGCATCACTCCTATGAAAGGCACACCATTCAAGAGTGCAGTGTGTGCACAGTTTGAAGAAGCGAAAAGCCGGAGCGTGTTTGATGGAGGAACGAGGGGGGGTCTTTTTCTTGTCCCCCGTGTTCGTGGCACTTCTCTCGTGTTTTTAAAGGAGCCTCAGCTGCTACAACGGCCGTCTACACATCACGCACACACTACGCCGGGAGACGGGAGCACTGACCAAACCAAAGTGGGGGCCGCAGGATGAATCCACCGAGTGAGTGGGGAAAACTGTAAAAGAGTAAACAGttgtttttcatcattttcagCAACAACTTCTGTTAAAATGCTCAGGCAGCATGGATGGGCATTTATCTGTGTGTCACCCTAAGATTGTGTTATATTTAAAATTGTCTTGTTCTttatcctcttcttcttctacttcttcttcttcttctttttgatcACCGCATATTACAAGAATGGAAATGAATTTTGTCTACACATCCTTTACttaaaaaatcaaacaaacaaaaagattaGGCTATTAGACTTGCTTAGCAGTATTATCTGCAATAAACAAAGGACGTCTACTTATTATTGCCAGCTCAGTCTGACTCACCGGATGTAGACTGTTGGGATAAGGACTGCCATTGGCTGCATATTTTAGTCGGCATTCCCCTCCCCGCTATATCTCCGCCGgtatctattttgcaagggcactgTCGCTGCAtctggagcttagcgctgcccaaggcgattgtgattggtttaaagaaattcaaacaagccgcaatgtttttttcctcctatcccagaatgtcaACTCATGCAGCCAGACGTTTctccagcgctgacacagcACTGTGCAAGTTAGGAATGCGCCTGAATCGCAATAATTATCAGCCATATAAGGAAATGCATTTGTTCTGATTAAGGCTCAGTACTAGCCTcactccgccctcctacgtacttccgctcaattttcatttcccttcagtactccgtctgggtttgcggtatattcttgggttttctccggttTTCAAATATTTGgcagtccaatcagcgaacagagggagtggctgagatcGACGAAGTTGAAGACGTGcgctagaaagatgcgagcgaagccattcggtccgttgtggcagcAACGCTGCCGAACATCCAGAAGcaaaagcccgagcaagaacaatctttgctgagttttgttggtggacatgatgttgtggcccctTCTCCCCAcgggggttcgggaaaagttagattgTCCAGCTCGctctgttagtggtgaaggagttggctaaggctaacactagcgatgctaatgctaaatataagccgatagttgtcggtctcccctcttgttgcacatgcgcatgacatacgaTTGTCATGCGAttgttagcgattggttatggcagatccagagtggctcttggcagatccaatagttttaaacttcaacagagtacccgccctCAAGGAAGTTAAcccttgtcaatggagagtggacagattctctgtacaaatgaaatgtagcagagtctggtaggaccaggctagttcAGTACTACTGTAAATGgcaaatggactgcatttatagacaaagcgctttacaatctgcctctcattcacccatttacaCACACTAAAACAAGTAGAAAGTGTTAATCACACATTGTGTTGAAAATCATTCATAATACTTCAATGTGCGAACACTGGCAGCACGCTTAGCAACTTTGACTGCCATGTGAAAATCGGTTGTTCAGTCAAAATCTCCACGCAGTTGAAAAAGTACTCAGTTCAAATAGTTCACTAGACCTGAACGTCCTTCAGAAAAGCCTAAGGTGATGAATGATACTTCCTTGTGAATGTTTAAGCTTTTCCTTTGGTTTTACAAATGTGCTTTGTTTTTGTAATCTGACTTCAATAACTGATCCTTTAAAATTTGCGATGTGAAATATTTTTATGAGAGTCACTTCACACAGGAGATCTGGCTCAGGGGCCCCAAACCTAGGGTCCTGTGGTCTCAGGTCTCACGCCCATGAGCaataagccccccccccccccagctccAGTAGAGAAGTGTAGCAGCTCACGAAGCAGGGAGCTCCTGCTTCGGGTACAGTGCAAATGTGTTAAAGCCTCCCTCTCCCTGTGATTTCCCCTCCAGGACAGCTTTTTTAATCAGCTCACCTGCTTGAAGGAGAAGTActtacagttacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactggtccgAACAGTCTGTTTCTGTACAGTTCTCTGTTTTGAGAGGTGTGGGGTTGGTGACAATAACTTGATAAAAAATGCAGCAATAGTGGAAAGATGATGTGATGTCTACAGTGAAAGACAACCACATTTAAAAAGTCTTTACATATTTGACCAATATAATTCCTATTTTAGAGAAATATTAGGAACACTAAAatgatatataaatgtaaagaGTTCAGATCCAGGGACTAAAgaagttgtgtgtttgtgtgtgtgtgtgtttgtgtgattttctttttcacgTGTTATGTgtcattattatatatattatgggACATACTGTGTTTGTCCTTGTCGTGTAAATCATGTCCTGTACGTAATGTGATGGAAGTGTTTGGGACGGGACATTAAACAAGAAAGAAACCTTGCATGGACATTTCTAAATGTATTACTGTAGGATGTGCCATCTCTTAGTTTTTCTTTGACTTTGTCCTTTATTTTTTCTGCTGTGACAACAGTATCACTGTTATGTATCACAGCTATGACTATGTGTGCAATCTTTATTTAAAAGGCAAGACGCACAGAGAAAGATGTGTATAGGGAATTAATGCCCATTCATGTTATAGTGTTACTTTTGcagaagtgtgtctgtgtgtgtatatactgtatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtaagggAAGGAGCAATAGAAAGAGAGAATGTTTTCACAATTATTTGTAAAATACAGCAGTATAGTTATCAGATGGACACCGAGCAGCCATTTAATCAGCCAGACATGCACTGAACTAAATGAAAAGCTGCGACCATTTCTTCTCACGCTCTATAGGTGAAGGAAATGTTCAACTATCTTGAACTGGAAAACAACCAGGTACACATAAGTGGTTAGGCTCCAAAAGCAAATTGATCAACATTTAAAACTCTTTTAAATATGCCATTTAGCTCAACTCTCCATTTTCCCTTGAATAATTGATTTGTGGTCTTTTTCTCAATTTAACAACAGATGAAAAAGTGAGACaagacacactgtgtgtgtgtgtgtgtgtgtctgttacttTTTACCTTACACTTTAATCCCTCTCTTCATGTGTGCTTTTTTGTCTCCCTATTTGTTATAATTAACATAACATAATTTTATATTTGATCTgattttgtcttattttgtcatatcttttctcttctttgttCAAATATGTCATAATGTCTATGGACTAATTGAAAATGTGCAtacatagatttaaaaaaagaaagcctAACTTTAAGAAAGACTGAATGGGTTTACTGGTATATTCACCTTTGTAGATTATGTATGTTTCAATATTAATGATGCTTTTAACCATTTCTATACAgcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36279 lncRNA downstream 243039 13753706 ~ 13754074 (-) True G27230
TU36260 lncRNA downstream 276517 13719198 ~ 13720596 (-) True G27211
TU36258 lncRNA downstream 284845 13708919 ~ 13712268 (-) True G27210
TU36253 lncRNA downstream 300280 13695578 ~ 13696833 (-) True G27208
TU36251 lncRNA downstream 302865 13693745 ~ 13694248 (-) True G27206
TU36357 lncRNA upstream 162946 14167557 ~ 14167758 (-) True G27295
TU36359 lncRNA upstream 165002 14169613 ~ 14169839 (-) True G27297
TU36363 lncRNA upstream 175516 14180127 ~ 14180348 (-) True G27301
TU36375 lncRNA upstream 219725 14224336 ~ 14225278 (-) True G27309
TU36389 lncRNA upstream 523231 14527842 ~ 14528127 (-) True G27322
XM_039795130.1 mRNA downstream 1798 13967714 ~ 13995315 (-) True hsd17b12b
XM_039795129.1 mRNA downstream 1800 13967714 ~ 13995313 (-) False hsd17b12b
XM_039794263.1 mRNA downstream 269643 13723593 ~ 13727470 (-) True LOC120555520
XM_039796044.1 mRNA downstream 590498 13402324 ~ 13406615 (-) True chst1
XM_039794264.1 mRNA downstream 702852 13285241 ~ 13294261 (-) True LOC120555522
XM_039794845.1 mRNA upstream 12941 14017552 ~ 14048294 (-) False ttc17
XM_039794844.1 mRNA upstream 12941 14017552 ~ 14048293 (-) True ttc17
XM_039794175.1 mRNA upstream 57425 14062036 ~ 14090460 (-) True trpm5
XM_039794096.1 mRNA upstream 96518 14101129 ~ 14153448 (-) False kcnq1.1
XM_039794095.1 mRNA upstream 96518 14101129 ~ 14153448 (-) False kcnq1.1
XR_005638877.1 other downstream 707849 13289210 ~ 13289264 (-) True LOC120556590
TU36095 other downstream 901347 13069996 ~ 13095766 (-) True G27075
TU35932 other downstream 1692289 12304539 ~ 12304824 (-) True G26924
TU35894 other downstream 2035341 11960701 ~ 11961772 (-) True G26891
TU35842 other downstream 2327844 11643571 ~ 11669269 (-) False LOC120555651
TU36388 other upstream 465147 14469758 ~ 14470345 (-) True G27321
TU36517 other upstream 838102 14842713 ~ 14843905 (-) True G27420
XR_005638870.1 other upstream 1635158 15639769 ~ 15639960 (-) True LOC120556584
TU37150 other upstream 3503512 17508123 ~ 17513168 (-) False G27925
TU37147 other upstream 3505339 17509950 ~ 17513168 (-) False G27925

Expression Profile