RNA id: TU36375


Basic Information

Item Value
RNA id TU36375
length 943
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G27309
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 14224336 ~ 14225278 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAATAGTTTGAATAAGCACATGGATCACAGTAGATGGATTTCCAAAAATAAACCGTTTACATGATAGGTGGGTTACGGTTGGAAAAAATGTGGAGATTAGTCTGCAAGTTTTGGAgcacaaaataagaaaaatatcttGTTAGGATCTTGCTTCTGTCTTTTGCTTTGATGGATGTACAACAGCACAATAACCCATTATTAGAGCCCAAGTTCTGCTGCTTGAAATGCCAAGTTGAAAGCAATTTCTCCGTTTTATATTGTCCCATCACAAGCAATTGACAAATGTGACATGAGTATTAGGGGTATTTTTAGATGGATAGAAAAAAGGGATTGAGGATATAGTCATATTTTGAGGGAATAAAGAAGTACTTTCAAGAAAGAAGTATTAAAATTACAAAGATAGGCTAAACTTTGAAACTTAAAATTTTGAGAAAGGAAAATAACAGTATTACAAGACTAAAAGTAATAACTTTGAAAATAAGGTGATACTATTTAGAGAAATAAGTTTTAATATGAGAAACCatcatgttttaaaaaacatttttgaacagCAATTCTCCAAAATTGAAATTTTAGTATTAAGAATCAGTTGGTGGATTAGACAGAGGAGCCAGTGAAACTTACCAACATTTGTTTGTCAGTGAGCAGAAGCCTTCAACATTAAATTGTGTTTTGATGTTTTCTCTGCACACTTCGGCATTGCCGTCTGCAAGAAAACCTGTCAAAAATCAAGTAGAAGCCAGTTTCTCCATTACTTGTCATAGACGAGCAATTGTGTCAATTGGGCTTCAATTATCAGTTATAATAACTGGAGTATTGCCTTAAAGGTGCCCCATGAGTTgttgcatggtttcagcgcgatttaatttttgtctcaaatcgtaggcatctctccttgatccgctagctgcctgccccctgaatacactgtgaaaaagcccgg

Function

GO: NA

KEGG:

id description
ko04724 Glutamatergic synapse
ko04728 Dopaminergic synapse
ko04713 Circadian entrainment

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36363 lncRNA downstream 43988 14180127 ~ 14180348 (-) True G27301
TU36359 lncRNA downstream 54497 14169613 ~ 14169839 (-) True G27297
TU36357 lncRNA downstream 56578 14167557 ~ 14167758 (-) True G27295
TU36332 lncRNA downstream 219725 13997113 ~ 14004611 (-) True G27277
TU36334 lncRNA downstream 221589 14001850 ~ 14002747 (-) True G27279
TU36389 lncRNA upstream 302564 14527842 ~ 14528127 (-) True G27322
XR_005638842.1 lncRNA upstream 348173 14573451 ~ 14577785 (-) True LOC120556357
TU36403 lncRNA upstream 348337 14573615 ~ 14577795 (-) False LOC120556357
TU36407 lncRNA upstream 353533 14578811 ~ 14580007 (-) False LOC120556476
TU36413 lncRNA upstream 387837 14613115 ~ 14613329 (-) True G27344
XM_039794096.1 mRNA downstream 70888 14101129 ~ 14153448 (-) False kcnq1.1
XM_039794095.1 mRNA downstream 70888 14101129 ~ 14153448 (-) False kcnq1.1
XM_039794094.1 mRNA downstream 70888 14101129 ~ 14153448 (-) True kcnq1.1
XM_039794175.1 mRNA downstream 133876 14062036 ~ 14090460 (-) True trpm5
XM_039794844.1 mRNA downstream 176043 14017552 ~ 14048293 (-) True ttc17
XM_039794112.1 mRNA upstream 499 14225777 ~ 14250332 (-) True lingo1b
XM_039796120.1 mRNA upstream 352749 14578027 ~ 14580011 (-) True LOC120556476
XM_039796067.1 mRNA upstream 413708 14638986 ~ 14654184 (-) True muc15
XM_039795302.1 mRNA upstream 514914 14740192 ~ 14804767 (-) True madd
XM_039794711.1 mRNA upstream 586167 14811445 ~ 14828395 (-) False nr1h3
XR_005638877.1 other downstream 935072 13289210 ~ 13289264 (-) True LOC120556590
TU36095 other downstream 1128570 13069996 ~ 13095766 (-) True G27075
TU35932 other downstream 1919512 12304539 ~ 12304824 (-) True G26924
TU35894 other downstream 2262564 11960701 ~ 11961772 (-) True G26891
TU35842 other downstream 2555067 11643571 ~ 11669269 (-) False LOC120555651
TU36388 other upstream 244480 14469758 ~ 14470345 (-) True G27321
TU36517 other upstream 617435 14842713 ~ 14843905 (-) True G27420
XR_005638870.1 other upstream 1414491 15639769 ~ 15639960 (-) True LOC120556584
TU37150 other upstream 3282845 17508123 ~ 17513168 (-) False G27925
TU37147 other upstream 3284672 17509950 ~ 17513168 (-) False G27925

Expression Profile