RNA id: XR_005638843.1


Basic Information

Item Value
RNA id XR_005638843.1
length 1404
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id LOC120556358
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 14574197 ~ 14577703 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTAACTCAAAGAATATGGTGTTAGGAGTTGAATGTATAGCTACCATGGTTTATGGGGggaaagtaaaatgtatttatttcccTAGCCGCTTAACTTTAAATTTGACCAATCGTTAAACAATTGATTAAAGGACTCTTTTATATGGCTTTAAGTTTTTCTTGACAACATAATGTTGTTAGCTATCTAGCTATATATTATGTCATTAACTTGTAATACATCTGTTATTCTAACAATATAAGAGTTATCTACATCATACTGGTTCCCTGCATACTAAtgcatggcattttttttaatcttgttattgtgttttataaCCCCATGCATGCacttaaaaatatacattttaattatttcatatgtataataacagtcagtgtaaaaaaaaggccatagtaacaCTTGCTCTCGCTCCTGAGATGGTTGACCAATCAGTGATGAGAGTCATCGCTTTGATCTCCTGCCAATCACTCGCGCTCAGACAGAAGAAAGGCACAGACTGCAGCAGCTGCAAAAAGGACCtttctttatcttttctttcCCATTTTCAGACTTGTTGAAGTGATGTGTGTAACGTGAGAACAACCACTTCAAAGTGAAAAGCATCGCCCAAGTCACCACCTTCCTCCAAGGGCTCACCGAATTTGAGTGGAAGACATCAAACTAGTACGGACCACCCCACCAGAGCATAAATACTCTTGTCTGGATTGGAGACCCCCAAGCAGATGTGGATCAGCAAGCAGAAGTACCATGGGTTCGGCCCCTCCATCATCCTTCACAAATCTTCTAAAGCTTCTAAACAAGACTGTTCCTCCTTCCCCTCCCCAACCAAATGCCCATCAACTTCAGCTCTGTGGTAAACAACCACACCACATTTTTCATACAAGTTACAGTATCATACTGTACAATGGAACTGCGGTAAGGGCAtcatactgtaaaaaacatgTACACTTATGGTATTGTAAGGGGGTAGTTACAGTGACTCCGCATATCTACATAACAAGTCTAACAGTGTATTTCATGGTACATTTTAACGtccattttgaatttgatgccagcaagacattttcaaaaaaagtttgGTCATGTTGGGGTAGCACATATTTTATACATCTTCATGCAGTGAAGATAAGGCTGTATGCCTAGTGAAGATGAAATACGCCTCTGTTTAATGGTAGGTTagacagaggaagaaaaaacaatCATTGGAAGACACTTACATTCACTTTCGCAGCTGCTGGAATCTGCATGAGGGGGAGGCATCTGCTTTTCtgtgttgaagaaaaaaattatcaaaatgtAAATTACTTAAAACTCCAACCATTTGCAAAGGTATTTGATCagtcttacaaaaaaaaaaacatcaccatTACTTGGCCTTACTAAAGGCCTTGTGTACCTTTTTc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36387 lncRNA upstream 107517 14466478 ~ 14466680 (+) True G27320
TU36368 lncRNA upstream 349963 14223309 ~ 14224234 (+) True G27306
TU36310 lncRNA upstream 572550 13997113 ~ 14001647 (+) True LOC120555409
XR_005638709.1 lncRNA upstream 572763 13999535 ~ 14001434 (+) False LOC120555409
TU36293 lncRNA upstream 637469 13928199 ~ 13936728 (+) True G27241
TU36427 lncRNA downstream 106130 14683833 ~ 14684116 (+) True G27356
TU36433 lncRNA downstream 153114 14730817 ~ 14731646 (+) False G27358
TU36436 lncRNA downstream 153114 14730817 ~ 14731646 (+) True G27358
TU36425 lncRNA downstream 156212 14733915 ~ 14735176 (+) False bbox1
TU36528 lncRNA downstream 373172 14950875 ~ 14953193 (+) False kcna4
XM_039795756.1 mRNA upstream 110904 14283159 ~ 14463293 (+) True luzp2
XM_039795637.1 mRNA upstream 479876 14092864 ~ 14094321 (+) True cdkn1ca
XM_039794847.1 mRNA upstream 518703 14048291 ~ 14055494 (+) False traf6
XM_039795301.1 mRNA downstream 125276 14702979 ~ 14706234 (+) True fibinb
XM_039795300.1 mRNA downstream 130859 14708562 ~ 14734747 (+) True bbox1
XM_039794712.1 mRNA downstream 274582 14852285 ~ 14860024 (+) True LOC120555721
XM_039794713.1 mRNA downstream 274613 14852316 ~ 14864789 (+) False LOC120555721
XM_039795511.1 mRNA downstream 311687 14889390 ~ 14965062 (+) False kcna4
TU36145 other upstream 1336378 13235235 ~ 13237819 (+) True LOC120556202
TU36106 other upstream 1463858 13109757 ~ 13110339 (+) True G27086
XR_005638880.1 other upstream 2542469 12031621 ~ 12031728 (+) True LOC120556595
TU35313 other upstream 4714197 9847277 ~ 9860000 (+) True aldh1a3
TU35242 other upstream 4969761 9566831 ~ 9604436 (+) False adamts17
TU36647 other downstream 863774 15441477 ~ 15446392 (+) False LOC120556433
TU36678 other downstream 897461 15475164 ~ 15486421 (+) False LOC120556001
XR_005638756.1 other downstream 3146845 17724548 ~ 17742734 (+) True LOC120555788
TU37478 other downstream 3984192 18561895 ~ 18568480 (+) False LOC120556478
TU38013 other downstream 4909543 19487246 ~ 19487533 (+) True G28581

Expression Profile