RNA id: TU36425


Basic Information

Item Value
RNA id TU36425
length 1262
lncRNA type sense_over
GC content 0.39
exon number 1
gene id bbox1
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 14708562 ~ 14735176 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTTGCTACCTCTCCTGTTCAATCCTGTGCCTAAACAAAGGACGTGGTGTCCCCGACTTTCCCTTCATTCTGTAGCGTTGCAGTCTGAAGTAAAATTGCCTTAAGTACAGCAGCTGCAATGTACTGCAGTGTGAAGTTTCTGCACCTaaactttacatttaaaaaggttAGTTCAACCAGTCTACTTCAATCAGTCTACTTAACCCTAGTGGCATCTGGCCAAACAGAAACATTTGGGTTCTATTTTCcttcaccactgtcgcactaaatgcttgctcttgggggggaattgttgggtctctgtaaattatattgtgtggtctagacctactttatctgtaaagtgtctcgagataactcgttatgattcgatactatgaataaaattgaattgaatctgcGGAGGTTTTGAGATACAGTGTGCTGTCTATGTCCAGTGATGCATTTCTAGATTTAGGATTGATCAAtatcgtcacaaagctgaatACCAGCCTGTTGATTttagctaaaaaaataaataaaaaaaaaagttgacatTTTCAGAGGACAGCAAAGATACACTTTTGAAAATCCTGCGAATGCCTTAATGTGCCTGTATACAGGATGATTGAAAAATCACGTTGCAAAAACTCAAACAGCAAGTTATCTTTCCAGAAATGATGCCCTGATTATCTGTATAATCCACAGATGTCACTGTGGAACGCTCTATCAAAGGGAAACTATTAACTGGGAGTTCAGTGCATTATCCAGACGTTTAGGAAGTTAAACTgaatgttttaaaggtcccgtgacatggtgctctttggatgcttttatataggccttagtggtcccctaatactgtatctgaagtctcttttatatagaccttagtggtcccctaatactgtatctgaagtctcttttatatagaccttagtggtcccctaatactgtatctgaagtctcttttatatagaccttagtggtcccctaatactggatcggaagtctcttttatatagaccttagtggtcccctaatactgtatctgaagtctcttttatatagaccttagtggtcccctaatactgtatctgaagtctcttttatatagaccttagtggtcccctaatactgtatctgaagtctcttttatatagaccttagtggtcccctaatactgtatctgaagtctcttttatatagaccttagtggtcccctaatactgtatcggaagtctcttttatatagaccttagtggtcccctaatactgtatct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36433 lncRNA upstream 2269 14730817 ~ 14731646 (+) False G27358
TU36436 lncRNA upstream 2269 14730817 ~ 14731646 (+) True G27358
TU36427 lncRNA upstream 49799 14683833 ~ 14684116 (+) True G27356
XR_005638843.1 lncRNA upstream 156212 14574197 ~ 14577703 (+) True LOC120556358
TU36395 lncRNA upstream 156665 14576443 ~ 14577250 (+) False LOC120556358
TU36528 lncRNA downstream 215699 14950875 ~ 14953193 (+) False kcna4
TU36530 lncRNA downstream 222324 14957500 ~ 14957867 (+) True G27432
XR_005638806.1 lncRNA downstream 264528 14999704 ~ 15000287 (+) True LOC120556117
TU36548 lncRNA downstream 281408 15016584 ~ 15017505 (+) True G27449
TU36556 lncRNA downstream 312701 15047877 ~ 15053619 (+) False LOC120556271
XM_039795301.1 mRNA upstream 27681 14702979 ~ 14706234 (+) True fibinb
XM_039795756.1 mRNA upstream 270622 14283159 ~ 14463293 (+) True luzp2
XM_039795637.1 mRNA upstream 639594 14092864 ~ 14094321 (+) True cdkn1ca
XM_039794848.1 mRNA upstream 678421 14048370 ~ 14055494 (+) False traf6
XM_039794712.1 mRNA downstream 117109 14852285 ~ 14860024 (+) True LOC120555721
XM_039794713.1 mRNA downstream 117140 14852316 ~ 14864789 (+) False LOC120555721
XM_039795511.1 mRNA downstream 154214 14889390 ~ 14965062 (+) False kcna4
XM_039795510.1 mRNA downstream 154214 14889390 ~ 14953245 (+) True kcna4
XM_039795749.1 mRNA downstream 312726 15047902 ~ 15053622 (+) False LOC120556271
TU36145 other upstream 1496096 13235235 ~ 13237819 (+) True LOC120556202
TU36106 other upstream 1623576 13109757 ~ 13110339 (+) True G27086
XR_005638880.1 other upstream 2702187 12031621 ~ 12031728 (+) True LOC120556595
TU35313 other upstream 4873915 9847277 ~ 9860000 (+) True aldh1a3
TU35242 other upstream 5129479 9566831 ~ 9604436 (+) False adamts17
TU36647 other downstream 706301 15441477 ~ 15446392 (+) False LOC120556433
TU36678 other downstream 739988 15475164 ~ 15486421 (+) False LOC120556001
XR_005638756.1 other downstream 2989372 17724548 ~ 17742734 (+) True LOC120555788
TU37478 other downstream 3826719 18561895 ~ 18568480 (+) False LOC120556478
TU38013 other downstream 4752070 19487246 ~ 19487533 (+) True G28581

Expression Profile