RNA id: XM_039795300.1


Basic Information

Item Value
RNA id XM_039795300.1
length 3028
RNA type mRNA
GC content 0.48
exon number 8
gene id bbox1
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 14708562 ~ 14735176 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCACTTACTGTACAGTGATTATGTCATCCCGCACAGCCTCCCGGTCAACCTTTCacccactttctctctctcacacactgacAACAGCACCGGCATTTGTGTTGACGGCGCTCGTGGGGAAGAGGAACCGTAGACAAAATATCACAGAGGTTGGTGGCCCTTTCCGATCTGGAAACATAGCCTAGTTGCCTGGAGGGAACCATTCAGAAATGTGGATGAGTACATTTGCACGTCTCGCCCTGCCTGCTCTGCAGAGAAGTACCTCTGCTACGGCCTGCCAGGCGTTGAGGGCTTGTCGTAGACCGGGGCAGGCTGCAGGTCCACTGCCCTCTCGTCTGACTTCAATGCAGCTTCGTGCGCAGCACACACTAGGgtctgcctccctccctctggcTCGCCACTCAGTGAGGCATGTCCGGGCTCTGGATGAAGAGAGGATGATGGAGGTGGAGTGGGAGGATGGAGGCCAAAGTCTGTACCCATTCACCTGGCTGAGAGACAACTGCCAGTGTCCACTGTGTACCCTGGAGTCTGCTCAGGCCCGCAAACTGTTGATGTCTGATCTTGATATCCACACAGGAGTCAACGTTGTGGAGGTCACCAATGATTACAAGGTGTCCATTGTGTGGCCCGACCAGCACACCAGTGTGTTTGACGCAGAGTGGCTGAAGAAACGCTGCTTCTCTGCTGCTGCCAGACAAGCAATGCAAGAAGAGCTTTTCCTCAACGAGCGTTATTATTGGGACTCCAAACTGCGCATTCCCACGGCCGACTACCAGGAAGTCCTCCATGACGATAAGGCGGCGCTGGCCTGGCTCTTGGCCCTGCGACGCGTTGGCATCGTCTACCTGAAGGGGGCTCCGGGAGAGCAAGGCCAAGTGGCCAGACTAGCTGAGCGGATTGGTTATCTCAGGCTGACATTCTATGGGCACACGTGGCAGGTCCAGGACAAATACATGGCAAACAATGTAGCCTACACTTCAGGAAGGCTCAGTCTCCATTCCGACTACCCTGCATTGCACTTTGCGCCTGGAGTGCAGTTTCTGCACTGCATCACCCAGGCCGAGGAAGGAGGGGAGAGCGAGGTGGTGGACGGCTTCCACACGGCCGAGCAGCTGCAGCGCGAAGACCCAGAGGCCTTCAGGACACTCAGCTCGCTCCTCGTGGACTACACCGACACGGGGACGGACTACTGCGACTTCATGCTGCAGTCCAAGAAATGCATCATCGACGTCACCGCCGACGGCCGAGTCGAGAGGATAAACTTCAACAACGCCACCCGAGATTCGGTGCTGGACCTCCCCGTGCATCAGGTTCAGCCCTTCTACAGAGCGCTGAAGGCCTACGTGGATATCATGAACCGACCGGAGAACGTAGTCACCTACAGAATGATGCCAGGCGACATCGTGACCTTTGATAACTGGCGTCTGCTGCACGGGCGAAAGAACTACATCAGCCGGCCCGACAGGTTGCGACACCTCGAGGGCGCCTACCTGGACTGGGATGAAGTCATGTCTCGCCTCCGGATACTCCGCTCCTCGGTCCACGGGGACATTTGAGCTCCGACTCGGAGGTGACCGAGTGGCTTTAATCCGCCAGTTGAGCTCAACGTTGCTCTCAAAACGCTGAGGGCAAAGTGCAAAGACAttcaagtgtctgacaacaagTCGAGAGCTAAATCTCTGAAATTGTCAAGCATCCAATCTGAAACAAAATTTGAGGAATTACACAATGATTCGGAGCGAGGATGCTTTCCGAAAGTCAGCTACATTTAAAGTGGCGATGGGGACTTTCTAAACTGGTAACATAGCGCAACACTTCAATGCAAAGATTATGGAAAAACACCTTGACTTCAAATGTTTAAGGTGCTTTTGGATTCAGTCATAGGGACTAGTGACTAATACGTTTTATAAGCTTAAATTTCCCCCGAGTACGGCACTTGATGATTATTTTTAAGATAATTCATCACGCTCAGTTCTCTGGTTAAATATTTAGCAACCTGCCTGCCTCAAAATACCTCTCTATTATCTATGTAACACACACTAATCacagacattttatagactccGTCTATAGTAAACTGTTGGGTATATTACGGTCTATAGGGAGTAGTGAACGTGGCACTGATTTCAGACAGAGCCTTTCtgtaaaggcttttttttttttttttttttccttaccgCCTGAAACACTATCTTGCTACCTCTCCTGTTCAATCCTGTGCCTAAACAAAGGACGTGGTGTCCCCGACTTTCCCTTCATTCTGTAGCGTTGCAGTCTGAAGTAAAATTGCCTTAAGTACAGCAGCTGCAATGTACTGCAGTGTGAAGTTTCTGCACCTaaactttacatttaaaaaggttAGTTCAACCAGTCTACTTCAATCAGTCTACTTAACCCTAGTGGCATCTGGCCAAACAGAAACATTTGGGTTCTATTTTCcttcaccactgtcgcactaaatgcttgctcttgggggggaattgttgggtctctgtaaattatattgtgtggtctagacctactttatctgtaaagtgtctcgagataactcgttatgattcgatactatgaataaaattgaattgaatctgcGGAGGTTTTGAGATACAGTGTGCTGTCTATGTCCAGTGATGCATTTCTAGATTTAGGATTGATCAAtatcgtcacaaagctgaatACCAGCCTGTTGATTttagctaaaaaaataaataaaaaaaaaagttgacatTTTCAGAGGACAGCAAAGATACACTTTTGAAAATCCTGCGAATGCCTTAATGTGCCTGTATACAGGATGATTGAAAAATCACGTTGCAAAAACTCAAACAGCAAGTTATCTTTCCAGAAATGATGCCCTGATTATCTGTATAATCCACAGATGTCACTGTGGAACGCTCTATCAAAGGGAAACTATTAACTGGGAGTTCAGTGCATTATCCAGACGTTTAGGAAGTTAAACTgaatgttttaaaggtcccgtgacatggtgctctttggatgcttttatataggccttagtggtcc

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0045329 carnitine biosynthetic process biological_process
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function

KEGG:

id description
K00471 BBOX1; gamma-butyrobetaine dioxygenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36427 lncRNA upstream 24446 14683833 ~ 14684116 (+) True G27356
XR_005638843.1 lncRNA upstream 130859 14574197 ~ 14577703 (+) True LOC120556358
TU36395 lncRNA upstream 131312 14576443 ~ 14577250 (+) False LOC120556358
TU36387 lncRNA upstream 241882 14466478 ~ 14466680 (+) True G27320
TU36368 lncRNA upstream 484328 14223309 ~ 14224234 (+) True G27306
TU36528 lncRNA downstream 216128 14950875 ~ 14953193 (+) False kcna4
TU36530 lncRNA downstream 222753 14957500 ~ 14957867 (+) True G27432
XR_005638806.1 lncRNA downstream 264957 14999704 ~ 15000287 (+) True LOC120556117
TU36548 lncRNA downstream 281837 15016584 ~ 15017505 (+) True G27449
TU36556 lncRNA downstream 313130 15047877 ~ 15053619 (+) False LOC120556271
XM_039795301.1 mRNA upstream 2328 14702979 ~ 14706234 (+) True fibinb
XM_039795756.1 mRNA upstream 245269 14283159 ~ 14463293 (+) True luzp2
XM_039795637.1 mRNA upstream 614241 14092864 ~ 14094321 (+) True cdkn1ca
XM_039794847.1 mRNA upstream 653068 14048291 ~ 14055494 (+) False traf6
XM_039794712.1 mRNA downstream 117538 14852285 ~ 14860024 (+) True LOC120555721
XM_039794713.1 mRNA downstream 117569 14852316 ~ 14864789 (+) False LOC120555721
XM_039795511.1 mRNA downstream 154643 14889390 ~ 14965062 (+) False kcna4
XM_039795510.1 mRNA downstream 154643 14889390 ~ 14953245 (+) True kcna4
XM_039795749.1 mRNA downstream 313155 15047902 ~ 15053622 (+) False LOC120556271
TU36145 other upstream 1470743 13235235 ~ 13237819 (+) True LOC120556202
TU36106 other upstream 1598223 13109757 ~ 13110339 (+) True G27086
XR_005638880.1 other upstream 2676834 12031621 ~ 12031728 (+) True LOC120556595
TU35313 other upstream 4848562 9847277 ~ 9860000 (+) True aldh1a3
TU35242 other upstream 5104126 9566831 ~ 9604436 (+) False adamts17
TU36647 other downstream 706730 15441477 ~ 15446392 (+) False LOC120556433
TU36678 other downstream 740417 15475164 ~ 15486421 (+) False LOC120556001
XR_005638756.1 other downstream 2989801 17724548 ~ 17742734 (+) True LOC120555788
TU37478 other downstream 3827148 18561895 ~ 18568480 (+) False LOC120556478
TU38013 other downstream 4752499 19487246 ~ 19487533 (+) True G28581

Expression Profile