RNA id: TU36528


Basic Information

Item Value
RNA id TU36528
length 2319
lncRNA type sense_over
GC content 0.38
exon number 1
gene id kcna4
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 14889390 ~ 14965062 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATCAGGCTGTAGCTGTCACACAAATAAATCAAGTTAATATGAAGATGAAGTATTAGTCCTTTTAGTCCAgtagaaaaaatcataaaagggAAAGCAAAACACATTTTGGTAGATAATGTAGACTTAGTACTGCTTCCTCATAAAATTATAAGGGAGAATTAATaaattgcattaaaaaaaacacttgatcATATCAGGATATATTATGAAAAACTCACTTTTTCAGTGCTTATGCATACATTTGAATATCTGGAGTGTCTACCAACCCACAAACCCAGTCACTTTTAAGTGGGCTGGATCAGAAAACATGGGATTCAACAAGCCATTCAGATGTTTCTCACCTTCACATGCAGGCTCATTAGAATATATCAAATTGGGGGTTTATCGGTTGGTTGCCCGGGAACCCCAGGGTGTCAAAAAGACactcaaaaaagacaaaaaaacaacaacttgttgcTGTCATAATTTGGTCTTTGTATGCATTAAACAAACCAGAATTAAAGCAGTTTTtcttacctttggacagagccaggctaggtGTTTCCCTCCCATTTCCAGTCAGTATGCTAAACTAAgaagctgctggctgtagctacTGTACATATTTACTGCACAGAAATGACAGTGGTATAGCCAactctctgcaaaaaaaaagaagagaatagtgaatttcccaaaatgtagaactattccttttagaggtaaattaaatgaaaatgtaacctGCCTGTAAAGAACAGAAGGGATTTTATTACACTAATCTTGTCAGATTATGAGCCTCAAATCACAAGCTGTTACTGTACCTGAGGGGCTCGGCCCGCCAGAGGCCTCATTTCTGACCTGACGTTTTGACTTGGTAACAGAGGCGCCGGCCTGAATGTTGGCTCACATAAAGATCTGAGATGTAGCTACTACCATACCAACAGGCAATAGTGGCCAGATGCTGCACTGCAACAATACTGAGAGCCAAATTAATCCATCTAGTGATATGTTCAGCTACAGCTTGGTGTTATCACAAAGCACCACAAAAGACGCTAAGCCGAAGAGCAATATATGCCCACAGGTTACTAGAGAGAACAAGAACAGGATCAGCCTGATTGATCCTCGAGGCTAACACATCCAATAAAGCAGAACAAACAAGCACtgaaggagacagaaagaaatctGTTTAACTGGACAGTCTCTAATCCATTTCCTCAATCTATGaattaaaataatgtatttgGTTAGAGGCTGCAATTATGTTCAACTTCACTTACATCTGCTTTCTACAGGAGGTCAGTAGTAACCCAGAGAAGGGCAGTGTGCTACACTGTATGAAGCAAGAAGATAATAAAGGTCGATGGGCAGATTTTGAGGCAGATTGAATATTACAGGAAGAAAAATAATTTATCCTTGCGTGTGCGCTGAATGAGATTCTGAATAAAAAGGTCATAATCCACACGGATATGTATCAAGAGGGCATATCATGAGTGGGCAAGGATTAGTGGGGAAATATCCACATGAGATTAAACAACAAATCAAATGTTTCTTTGACTTGGTGCTGCTAGATATACTGTACCTGCAGTAATAACTTTTGTGATGCTGTTGTGATTCAGCACAGCCAATGAGCTGTTAGAGTGGTTAACAGTTGTGTTGGGACATTAgataacacacaaaacaaggcgagagaacattttttaaattatgaccATCTCCGAACTGAAGAACTCACCAGGGctacatttaaaataacatgAGCAAAAAAGTCACTGTCACAGCTACTGGACAGAATAACTGAactcatttaaaagaaaacacatgttGGGGATTGATTTCATGTTAGGAAGGACTAGCTCGGTATTCATATTGTGAGAAACAGCTTTTCTGTTGAAGCTCACGTATATTTCTGAGGCCTGAACGACTCTGAGACTCAAAATCCTCTGTGCTTTCAACAGAGCGACTAGGCAAGATTAACTTTAAAATGACTGCCTCCCCAAATCAATAGCAAAGGATTTATTCTAGGAAACAACCAATTGACCACAGATCTAAAGCCATGCAAATCAACAGCCCAGTGCAATTTAGTGATGTACTAAATTGTATTCTGCATTCAGTGTTGCCAGATTTGACACAAAACAGCCCCATTGGATTCTCAAGCCAGCTCAATCTTCATAAATCTGGCCACATTTTTAATTgccatatattaaaaaaaaggtgctaGGAAGAAGCTTTAAGTTTTATTTGTACAATTAGGCAAACCCCAAACCATCCAAAACCAGGTTACAATTACGAAAAAAGTAGTGATTGAAAGTTAAAATATTAACATATAAGAACTAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36425 lncRNA upstream 215699 14733915 ~ 14735176 (+) False bbox1
TU36433 lncRNA upstream 219229 14730817 ~ 14731646 (+) False G27358
TU36436 lncRNA upstream 219229 14730817 ~ 14731646 (+) True G27358
TU36427 lncRNA upstream 266759 14683833 ~ 14684116 (+) True G27356
XR_005638843.1 lncRNA upstream 373172 14574197 ~ 14577703 (+) True LOC120556358
TU36530 lncRNA downstream 4307 14957500 ~ 14957867 (+) True G27432
XR_005638806.1 lncRNA downstream 46511 14999704 ~ 15000287 (+) True LOC120556117
TU36548 lncRNA downstream 63391 15016584 ~ 15017505 (+) True G27449
TU36556 lncRNA downstream 94684 15047877 ~ 15053619 (+) False LOC120556271
TU36558 lncRNA downstream 94684 15047877 ~ 15053619 (+) True LOC120556271
XM_039794713.1 mRNA upstream 86086 14852316 ~ 14864789 (+) False LOC120555721
XM_039794712.1 mRNA upstream 90851 14852285 ~ 14860024 (+) True LOC120555721
XM_039795300.1 mRNA upstream 216128 14708562 ~ 14734747 (+) True bbox1
XM_039795301.1 mRNA upstream 244641 14702979 ~ 14706234 (+) True fibinb
XM_039795756.1 mRNA upstream 487582 14283159 ~ 14463293 (+) True luzp2
XM_039795749.1 mRNA downstream 94709 15047902 ~ 15053622 (+) False LOC120556271
XM_039795750.1 mRNA downstream 95047 15048240 ~ 15053622 (+) False LOC120556271
XM_039795020.1 mRNA downstream 126601 15079794 ~ 15154115 (+) True ddb1
XM_039795411.1 mRNA downstream 409006 15362199 ~ 15374072 (+) False taldo1
XM_039795410.1 mRNA downstream 409007 15362200 ~ 15374072 (+) True taldo1
TU36145 other upstream 1713056 13235235 ~ 13237819 (+) True LOC120556202
TU36106 other upstream 1840536 13109757 ~ 13110339 (+) True G27086
XR_005638880.1 other upstream 2919147 12031621 ~ 12031728 (+) True LOC120556595
TU35313 other upstream 5090875 9847277 ~ 9860000 (+) True aldh1a3
TU35242 other upstream 5346439 9566831 ~ 9604436 (+) False adamts17
TU36647 other downstream 488284 15441477 ~ 15446392 (+) False LOC120556433
TU36678 other downstream 521971 15475164 ~ 15486421 (+) False LOC120556001
XR_005638756.1 other downstream 2771355 17724548 ~ 17742734 (+) True LOC120555788
TU37478 other downstream 3608702 18561895 ~ 18568480 (+) False LOC120556478
TU38013 other downstream 4534053 19487246 ~ 19487533 (+) True G28581

Expression Profile