RNA id: TU36536



Basic Information


Item Value
RNA id TU36536
length 408
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G27438
representative True

Chromosome Information


Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 14949578 ~ 14949985 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CACAAGTATAAATGTCTGCTATTTACATATATTCCTATTCAGTGTGCATCTATATCACAACATTTTCCAGAAGTCCACAACATACAATAAATTCAGGGGTTCACCTTTGGTTATGTAATTATCAAGgctaggtttaaaaaaatatataacacacgTCCATGTTACTTTTGCATACAGTTAAAGTGAAAACATATCAACAAAGCAGCTGGTCAGCTCTAAATTTGCATCTGAGAAAAAAACCTAAGGTATTTCATCTTCACGGCGAGTTTCACCCGCTGTTTTTCTGCGATAGAAAGTGAGTGTGGCAGATATTTATGATGATGTTTATGTGCCTGACATCTTTGCTTTAGTGTAAGTGGATCTTAATGTAAGAGGATATTCTTCTGATGTATTTCAGTGTGTTTCATT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU36531 lncRNA downstream 59515 14889777 ~ 14890063 (-) True G27433
TU36523 lncRNA downstream 87115 14854725 ~ 14862463 (-) True G27425
XR_005638783.1 lncRNA downstream 240916 14692209 ~ 14708662 (-) True LOC120556013
TU36474 lncRNA downstream 243362 14703059 ~ 14706216 (-) True G27395
TU36413 lncRNA downstream 336249 14613115 ~ 14613329 (-) True G27344
TU36538 lncRNA upstream 2700 14952685 ~ 14953344 (-) True G27440
TU36539 lncRNA upstream 3553 14953538 ~ 14953891 (-) True G27441
TU36549 lncRNA upstream 66605 15016590 ~ 15017488 (-) True G27450
TU36572 lncRNA upstream 100677 15050662 ~ 15053761 (-) False cfap70
TU36605 lncRNA upstream 199515 15149500 ~ 15154115 (-) True G27493
XM_039795469.1 mRNA downstream 68439 14878022 ~ 14881139 (-) True LOC120556084
XM_039794711.1 mRNA downstream 121183 14811445 ~ 14828395 (-) False nr1h3
XM_039794709.1 mRNA downstream 121184 14811445 ~ 14828394 (-) False nr1h3
XM_039794710.1 mRNA downstream 121184 14811445 ~ 14828394 (-) True nr1h3
XM_039795302.1 mRNA downstream 144811 14740192 ~ 14804767 (-) True madd
XM_039795631.1 mRNA upstream 67579 15017564 ~ 15043882 (-) True LOC120556194
XM_039795632.1 mRNA upstream 67579 15017564 ~ 15043125 (-) False LOC120556194
XM_039795748.1 mRNA upstream 103643 15053628 ~ 15078830 (-) False cfap70
XM_039795747.1 mRNA upstream 103643 15053628 ~ 15078830 (-) False cfap70
XM_039795746.1 mRNA upstream 103643 15053628 ~ 15078830 (-) True cfap70
TU36517 other downstream 105673 14842713 ~ 14843905 (-) True G27420
TU36388 other downstream 479233 14469758 ~ 14470345 (-) True G27321
XR_005638877.1 other downstream 1660314 13289210 ~ 13289264 (-) True LOC120556590
TU36095 other downstream 1853812 13069996 ~ 13095766 (-) True G27075
TU35932 other downstream 2644754 12304539 ~ 12304824 (-) True G26924
XR_005638870.1 other upstream 689784 15639769 ~ 15639960 (-) True LOC120556584
TU37150 other upstream 2558138 17508123 ~ 17513168 (-) False G27925
TU37147 other upstream 2559965 17509950 ~ 17513168 (-) False G27925
TU37149 other upstream 2560143 17510128 ~ 17513168 (-) True G27925
TU37410 other upstream 3268137 18218122 ~ 18220550 (-) True G28121

Expression Profile