RNA id: TU36548


Basic Information

Item Value
RNA id TU36548
length 922
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G27449
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 15016584 ~ 15017505 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTTATTAGTGATCAATGTTTATTCAAACATTCCTGGATTATCAAGACAGATATACAGCAGATCCGTTTAGTGTCGTCTTTGAGGCACACAGGAAAAAAGATCATTGCCAACAGTGAGTGACTATCATTTCCTACCAAAGTGTCTGttaaatacaataatatattCATGGTCTATAGAAAAGTCAAACAAAATCTTCATTCATGAAAACAATCTAAAAAGAGAGACATCAGGAGATACGTGAATAAGGCTGGAAGAGATACAGTAGGTCCTTACACAAAGTTACGGTTGACAATTTTGGCATCAGTGGATAAATcccttatataaaaaaaaaaaagaagcaaacatGAGGCACTTTATTATGAGCAATAGCAGTGGCACTGCTTGTATGTACGAGTAACGCATAATCACCTCACTACCTTAGGGTAGTCACACAGGGCACCAGTTATGCTGCTGAAGAAGGCACTAACTTGTGAGAAGAAAGTACTGTGTCCTCCGCAGGTCTTTAAGATTGACTGACTGATGTTTGTGGACATTTATTTCGAACAAGATAACAGGTAGGGTCATAGAGAAATAAATGATATTACACAAAATAGTACGCATAATGAGATACATGAATGACAAACGCGTGATGGTCAAACACCGACATGTACTATATGAAGACAGATTAGGCAAAAAAGAATAGCTCGTAAGAAAGGCGCCTCAAGTGTTACAGAAAATAATccttttacaaaatataaaaactaacagttcaaaagttttttaaaaaaaagaggccACGATCAAATGAATATTTGAAATGCACGACCGGCTAGTTAACGTGGAAACAAAAAGCGCTTTTGCAGTTGAAGAGGGCCCCGGAGTTCGGCTCGGAAAGGAAAGCTGCTGCGACGAGGAgggacattttttcaaatgccaaTTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638806.1 lncRNA upstream 16297 14999704 ~ 15000287 (+) True LOC120556117
TU36530 lncRNA upstream 58717 14957500 ~ 14957867 (+) True G27432
TU36528 lncRNA upstream 63391 14950875 ~ 14953193 (+) False kcna4
TU36425 lncRNA upstream 281408 14733915 ~ 14735176 (+) False bbox1
TU36433 lncRNA upstream 284938 14730817 ~ 14731646 (+) False G27358
TU36556 lncRNA downstream 30372 15047877 ~ 15053619 (+) False LOC120556271
TU36558 lncRNA downstream 30372 15047877 ~ 15053619 (+) True LOC120556271
TU36557 lncRNA downstream 32778 15050283 ~ 15053619 (+) False LOC120556271
TU36562 lncRNA downstream 44714 15062219 ~ 15065509 (+) True G27459
TU36704 lncRNA downstream 506469 15523974 ~ 15531915 (+) False G27565
XM_039795511.1 mRNA upstream 51522 14889390 ~ 14965062 (+) False kcna4
XM_039795510.1 mRNA upstream 63339 14889390 ~ 14953245 (+) True kcna4
XM_039794713.1 mRNA upstream 151795 14852316 ~ 14864789 (+) False LOC120555721
XM_039794712.1 mRNA upstream 156560 14852285 ~ 14860024 (+) True LOC120555721
XM_039795300.1 mRNA upstream 281837 14708562 ~ 14734747 (+) True bbox1
XM_039795749.1 mRNA downstream 30397 15047902 ~ 15053622 (+) False LOC120556271
XM_039795750.1 mRNA downstream 30735 15048240 ~ 15053622 (+) False LOC120556271
XM_039795020.1 mRNA downstream 62289 15079794 ~ 15154115 (+) True ddb1
XM_039795411.1 mRNA downstream 344694 15362199 ~ 15374072 (+) False taldo1
XM_039795410.1 mRNA downstream 344695 15362200 ~ 15374072 (+) True taldo1
TU36145 other upstream 1778765 13235235 ~ 13237819 (+) True LOC120556202
TU36106 other upstream 1906245 13109757 ~ 13110339 (+) True G27086
XR_005638880.1 other upstream 2984856 12031621 ~ 12031728 (+) True LOC120556595
TU35313 other upstream 5156584 9847277 ~ 9860000 (+) True aldh1a3
TU35242 other upstream 5412148 9566831 ~ 9604436 (+) False adamts17
TU36647 other downstream 423972 15441477 ~ 15446392 (+) False LOC120556433
TU36678 other downstream 457659 15475164 ~ 15486421 (+) False LOC120556001
XR_005638756.1 other downstream 2707043 17724548 ~ 17742734 (+) True LOC120555788
TU37478 other downstream 3544390 18561895 ~ 18568480 (+) False LOC120556478
TU38013 other downstream 4469741 19487246 ~ 19487533 (+) True G28581

Expression Profile