RNA id: XM_039795749.1


Basic Information

Item Value
RNA id XM_039795749.1
length 1957
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC120556271
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 15047877 ~ 15053622 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AATAAGAGGATCCACCAGGTGACAGTGGGAGGGAGCCATGTTGGATAGGGATCCTGTGTCATAAGAGGAGCCAAGGCAAAGGTTTACAGTACCTGCTTAACTAACACCCCAGTGGCAACAACAGTAGAGTGCTAGGAGGACCTGTGTTCTTCATCTACAACAAGCGAGGGAAGAAACTGTCTGTTTTAATGAAATGGATGACAAGTTCCCCGAAGGatgtctgtttctttttctgtaCTTCTAGGCTATCATGACACCATCCAAAAAGAATGCTCCTTTGAAAGAGAAGCTGCCTCTTACGTAACGAGTCTCTACTGGATTTACTTTGGTGCTTAAACTTCATTCAATTTATGACGGTTCATAAATTGGCGGATAAATCGGTGGCTGCTTTACCACACCACTGAACTGCGCTGCACGCCTGTTTATGTTGGAGCTGGAAAAATCCACACTTGTGACATGTTGACATCTGTGATCTCCACGCAGCTCATCCCAATACCGGACTCCGTTTCCCATTTTGAAAGGACTTCAATTTTCCCCGAGTAAACAGGACTAATTTGAACAGAAAATGGAGCCCTAAATGTTTCGATCGCACCTCAGAGTGGAGCCGTCTGAACGCCTCACTGAGCCCCCCAAGCTGTCAGGACTGTTGTGAGTGGATTGATGTTTCTATGTAACGCGTGTGCGAGTGCAGTGCAGCCTTGGATCCATCGTGGAACCCCCACAGTGCGCCCGGGCGCCCAGCCTTCGGGCCGGAGACGCTCCACACCAGCAACTACTCTCTGGTGTTACTGATTCAGCTCAGCCTGCTCTCCTTCGACCTGTTTGTTAACTCCTTCAGCGAGCTGCTGAGGGCTGAACCGGCTGTCCAGCTGGTGCTTTTCATTATCCAGGACATTGCCATCCTGTTTAACCTGATCATCATTCTGTTGATGCTGTTTAACACCTACGTGTTCAGGGTCGGCCTGGTCGCCATATTGCTGGAGCGGTTTAGAGCTCTGCTAATTCTCTCTGCTCTCTACTTGACCTTCAGTATCATACTCCATTCCTGGCTTATGAATCTACGTTGGCTAAATATCAACAGGTTTATTTGGACAGACGGCCTTCAGGTGCTGTTTGTGTTCCAAAGAGTCGCTTCTGTGTTGTACTACTATTTGTACAAGAGGACCTCAGAGTATCTGGGTGACCCTCGCCTCTACGAGGATTCACCGTGGCTGCGAGAACTGTTCGCTCGGGTCAGGCAGTGATCttactgcaaaaaaaataaataataaaagcacATGATGCCACAGAGGCCAGAACTTAAAAACAGGTTGTCACATGTGGAAACCAAAGATGTTATAATAAAGTGTGCATTTGGAAATCCATACTTAAAATGGGGGACAaaatgggcactttaatacagtgtattttaaatgcatttccAACCACAATACCAGCTACATTTTTGGGAACATTCATTTTCAGATTTAAAATAAGAAATACATTCAGGCCTAAATGCATGTGTTGCAAAacatatattataaaaaaacaaattgacaGGAATTGTAGCCAAAATATCTATTCCACATAGCATTTCCTTTCGAAGGATTGTGCCAAAATCTGGTAAGACGTTTTAGAACAACGTCTCATCAGGCTTGTTTTGCTGGTCAGAtggtaaaaatgaaaaaatgaaatgggAGATGATTTAATATATTCTGTTGATACCTGTCACCACATGccctttttcttgtcttttgttAATGCTGCAGTTGTTTTATATACATTTCAGACTATGTGTGTTGCTTTGAGTTTGTTTGCTGTGTCGATATTGAACAGGGTTTAACTTTATTATGACTTAAACAGTTACTGATCTCCAACTGTCTGTAAAATCTGACCCATCGTGTGCGTCCGAGCTGGCTGTGTTTCATTTTCACAAGAagtgttaaatgtttaaaatccaataaaatgtcttttgaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36548 lncRNA upstream 30397 15016584 ~ 15017505 (+) True G27449
XR_005638806.1 lncRNA upstream 47615 14999704 ~ 15000287 (+) True LOC120556117
TU36530 lncRNA upstream 90035 14957500 ~ 14957867 (+) True G27432
TU36528 lncRNA upstream 94709 14950875 ~ 14953193 (+) False kcna4
TU36425 lncRNA upstream 312726 14733915 ~ 14735176 (+) False bbox1
TU36562 lncRNA downstream 8597 15062219 ~ 15065509 (+) True G27459
TU36704 lncRNA downstream 470352 15523974 ~ 15531915 (+) False G27565
TU36705 lncRNA downstream 470352 15523974 ~ 15530314 (+) True G27565
TU36708 lncRNA downstream 480381 15534003 ~ 15535415 (+) True G27566
TU36709 lncRNA downstream 491869 15545491 ~ 15545779 (+) True G27567
XM_039795511.1 mRNA upstream 82840 14889390 ~ 14965062 (+) False kcna4
XM_039795510.1 mRNA upstream 94657 14889390 ~ 14953245 (+) True kcna4
XM_039794713.1 mRNA upstream 183113 14852316 ~ 14864789 (+) False LOC120555721
XM_039794712.1 mRNA upstream 187878 14852285 ~ 14860024 (+) True LOC120555721
XM_039795300.1 mRNA upstream 313155 14708562 ~ 14734747 (+) True bbox1
XM_039795020.1 mRNA downstream 26172 15079794 ~ 15154115 (+) True ddb1
XM_039795411.1 mRNA downstream 308577 15362199 ~ 15374072 (+) False taldo1
XM_039795410.1 mRNA downstream 308578 15362200 ~ 15374072 (+) True taldo1
XM_039795409.1 mRNA downstream 320566 15374188 ~ 15392333 (+) True LOC120556051
XM_039795407.1 mRNA downstream 320566 15374188 ~ 15392333 (+) False LOC120556051
TU36145 other upstream 1810083 13235235 ~ 13237819 (+) True LOC120556202
TU36106 other upstream 1937563 13109757 ~ 13110339 (+) True G27086
XR_005638880.1 other upstream 3016174 12031621 ~ 12031728 (+) True LOC120556595
TU35313 other upstream 5187902 9847277 ~ 9860000 (+) True aldh1a3
TU35242 other upstream 5443466 9566831 ~ 9604436 (+) False adamts17
TU36647 other downstream 387855 15441477 ~ 15446392 (+) False LOC120556433
TU36678 other downstream 421542 15475164 ~ 15486421 (+) False LOC120556001
XR_005638756.1 other downstream 2670926 17724548 ~ 17742734 (+) True LOC120555788
TU37478 other downstream 3508273 18561895 ~ 18568480 (+) False LOC120556478
TU38013 other downstream 4433624 19487246 ~ 19487533 (+) True G28581

Expression Profile