RNA id: TU36572


Basic Information

Item Value
RNA id TU36572
length 2960
lncRNA type sense_over
GC content 0.38
exon number 2
gene id cfap70
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 15050662 ~ 15078830 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTCAACCTGCAGAAGGAGTCCCTCTTCAAAGAGTTCAATGACCTGAAGGATCAGCTCCGCTTCGCTCATCTGGTGTCATGCTTTGGAACAAGCTCATAAATCATTTGACCAAGTACAtttcatacaaacacacacacatctcaaaagacattttattggattttaaacatttaacactTCTTGTGAAAATGAAACACAGCCAGCTCGGACGCACACGATGGGTCAGATTTTACAGACAGTTGGAGATCAGTAACTGTTTAAGTCATAATAAAGTTAAACCCTGTTCAATATCGACACAGCAAACAAACTCAAAGCAACACACATAGTCTGAAATGTATATAAAACAACTGCAGCATTaacaaaagacaagaaaaagggCATGTGGTGACAGGTATCAACAGAATATATTAAATCATCTcccatttcattttttcatttttaccaTCTGACCAGCAAAACAAGCCTGATGAGACGTTGTTCTAAAACGTCTTACCAGATTTTGGCACAATCCTTCGAAAGGAAATGCTATGTGGAATAGATATTTTGGCTACAATTCCtgtcaatttgtttttttataatatatgtTTTGCAACACATGCATTTAGGCCTGAATGTATTTCTTATTTTAAATCTGAAAATGAATGTTCCCAAAAATGTAGCTGGTATTGTGGTTggaaatgcatttaaaatacactgtattaaagtgcccatttTGTCCCCCATTTTAAGTATGGATTTCCAAATGCACACTTTATTATAACATCTTTGGTTTCCACATGTGACAACCTGTTTTTAAGTTCTGGCCTCTGTGGCATCATgtgcttttattatttattttttttgcagtaaGATCACTGCCTGACCCGAGCGAACAGTTCTCGCAGCCACGGTGAATCCTCGTAGAGGCGAGGGTCACCCAGATACTCTGAGGTCCTCTTGTACAAATAGTAGTACAACACAGAAGCTGTGAACAGAAAAATTATGTGAGGTTTtatcatacaaaaaaaaataacatacagaaaatacacTTGTTTCcacattttaaatcaatttcAAGTTGCTCGGAGTGAGACTGTCCCGTAGCACAAAAATTGAGTTGCTGATAAATACTAATGACTTACAGTACTTTATTACAGGTTTTGACATATCTGCCTTCATAGCTAGTCCAATTCTCAACTAATGGAGGACAGTGCTTTCAATAAGTAGTCAGCGGCACAACACATCCAAAACAGctaataaaaaaaaccaaatgaaataaatatattttgttgaatCTCTAATAAGCCAGTTTAGTTGTTCTGTTGGGAAATCAAGAATCTTTATTTCATAgaaccatgcttatgttttgtCTGGTTAAAACGATTACTACAAATCATTCATTACTTTCATCACTTCAAACTCTTGTTCTgacttgttcttttttttttaagaattcatgCAAACGCTGCATCCACTTTCAATCCTGTCGTGAAAATCCACTTGCAAAAACTTGAGACTCGCTTCAGTTAGGTAAATCATCACACCGAATTACTTCAGTTATTGTCTGAAACCAATCTCTATTACCAGAATGATAACTTAACGTTCAAAATGTAGCTGCATAAAAAGGTGAGAAATGTCAtttgtgtaaataaatacatcaatAGCCCTTTTTAGTTGGCATAATCCCAAGTGAGTGGCTCCTATGTTTGAGTTTGAACAATGATTCAGGTTACTTGAGAGATAGTATGTGACtgtacagagacagaggaatgGGAACTCCCCACCAGCATTTACAACTGCAACTCAGCCCAGTAGAGTTTACAGAGTCTTAAGGAAGGTTCATAATGAAAGAGCTTTTGTGGTGATGCAACACTGAATCACACGCTGAGTAACCGTCTGGGTGGGTCTAAAGTAGCAAACGGAACggagagaaataaaacatggCTGCAGTCTGTTCTCATACTTAATAAGGGATCACCTGCAGGGAAGAACAACAGCTAGACAGCAAATCCTTTTATCCACTTATGAGCTTATACATGTATGAAAATCACACCCACGAGGCGATGTGAGATCGCTGCCCGTCGGTAGAGAGGAGGGACTATAGCACACTCTGGGAACACTATAAGCTTTGTGTCAGTGAAACTCTTCAGAGCATAAAGAGTGACAATTACACTGAAATGCCCTGTCGTTCTATTTGATCATTGATTAAACATATGAGAGATGTGCGCAGCGgttcagaggtcagaggtgatTCGGTAAAGTGGCATAGTTACGGCAAACTATGGGTAAGAGGTAAAGGGAAAACTAAAAAGGTGGGAGAAATGATGGTACAGTTTACTTTAGTCCTTCAAATATGAATTATGTTTCATCTTTGTACTAGCATTCACTCTCTTaaatattaagtcaatatttcTGCTCTGAGGGAGAAATTAATCTTAATATTCAGCTGAGAGAAAACACAAAGCTCTGCTGTATTCTTAAGTCATTTCTCACTTATCATTCTCCTGTAACTCTTGCTCTCTGAGCATGTCTCAAATCTCATGGAATATGCAGTGATAAATTGTGTCTCCTTATTTtctgaaagaagacatattGTTGACATTATGAACAAAGCTCTAGAGACAACAGTAAACACTTCAAATGAATGCATTTAGGCTGGCATTAAAAAGAATGTATTAACAAGTCATCTTACCGACTCTTTGGAACACAAACAGCACCTGAAGGCCGTCTGTCCAAATAAACCTGTTGATATTTAGCCAACGTAGATTCATAAGCCAGGAATGGAGTATGATACTGAAGGTCAAGTAGAGAGCAGAGAGAATTAGCAGAGCTCTAAACCGCTCCAGCAATATGGCGACCAGGCCGACCCTGAACACGTAGGTGTTAAACAGCATCAACAGAATGATGATCAGGTTAAACAGGATGGCAATGTCCTGGATACTGTGGAGGAAAAGCATACAGGAGGGAAAAGAAAAGCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36549 lncRNA downstream 33174 15016590 ~ 15017488 (-) True G27450
TU36539 lncRNA downstream 96771 14953538 ~ 14953891 (-) True G27441
TU36538 lncRNA downstream 97318 14952685 ~ 14953344 (-) True G27440
TU36536 lncRNA downstream 100677 14949578 ~ 14949985 (-) True G27438
TU36531 lncRNA downstream 160599 14889777 ~ 14890063 (-) True G27433
TU36605 lncRNA upstream 95739 15149500 ~ 15154115 (-) True G27493
TU36611 lncRNA upstream 126978 15180739 ~ 15181020 (-) True G27497
TU36615 lncRNA upstream 308273 15362034 ~ 15374091 (-) True G27499
TU36613 lncRNA upstream 319734 15373495 ~ 15374091 (-) False G27499
TU36673 lncRNA upstream 390565 15444326 ~ 15446509 (-) True G27545
XM_039795631.1 mRNA downstream 6780 15017564 ~ 15043882 (-) True LOC120556194
XM_039795632.1 mRNA downstream 7537 15017564 ~ 15043125 (-) False LOC120556194
XM_039795469.1 mRNA downstream 169523 14878022 ~ 14881139 (-) True LOC120556084
XM_039794711.1 mRNA downstream 222267 14811445 ~ 14828395 (-) False nr1h3
XM_039794709.1 mRNA downstream 222268 14811445 ~ 14828394 (-) False nr1h3
XM_039795901.1 mRNA upstream 127959 15181720 ~ 15356059 (-) False tspan4a
XM_039795900.1 mRNA upstream 127959 15181720 ~ 15356059 (-) False tspan4a
XM_039795898.1 mRNA upstream 127959 15181720 ~ 15355315 (-) False tspan4a
XM_039795897.1 mRNA upstream 127959 15181720 ~ 15320043 (-) True tspan4a
XM_039795177.1 mRNA upstream 365191 15418952 ~ 15427599 (-) True LOC120555953
TU36517 other downstream 206757 14842713 ~ 14843905 (-) True G27420
TU36388 other downstream 580317 14469758 ~ 14470345 (-) True G27321
XR_005638877.1 other downstream 1761398 13289210 ~ 13289264 (-) True LOC120556590
TU36095 other downstream 1954896 13069996 ~ 13095766 (-) True G27075
TU35932 other downstream 2745838 12304539 ~ 12304824 (-) True G26924
XR_005638870.1 other upstream 586008 15639769 ~ 15639960 (-) True LOC120556584
TU37150 other upstream 2454362 17508123 ~ 17513168 (-) False G27925
TU37147 other upstream 2456189 17509950 ~ 17513168 (-) False G27925
TU37149 other upstream 2456367 17510128 ~ 17513168 (-) True G27925
TU37410 other upstream 3164361 18218122 ~ 18220550 (-) True G28121

Expression Profile