RNA id: XM_039795276.1


Basic Information

Item Value
RNA id XM_039795276.1
length 2213
RNA type mRNA
GC content 0.45
exon number 9
gene id LOC120556001
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 15475147 ~ 15486451 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAGCGAGAGGGGGGTGCATACTCAcggacaggagagagagagagagagagcgagagagacgcGCTCCAATGAGAAAAGTTTACTTGTTCTTCCTCCGCACAATCCCACAGCTGAGGGCATTGATGTGAGCGCAGAGGCTTTCTGTTTTTTACGCGCACTTCTTTCCCCCCGTCTTTCACCACCACACACGGAGCACAAATCCACCTTCTCACCTTTAGTTTGGCGCGTGTcttgcatttctttttctttcatattttttccccTCCCTTTTTAATGAATGATTCTCTCTCGCAACACTTCTTCTACTAAGATATCTTCGGATACGCCGCCGTCCTCGTCTGCACGACCTCACCTCGGCACATCTTCTCTCAAGTTCAAGCGCCACCAAGACTTTCACTGCAGCTTCAGACGCACTTGGGGGAAATATCACACGGCGAAGAAAAACTTGATATTTTGTGCAGCAGCCGCAGAAGCGACCGCCAACATGAGCCTGAAAGCTGACGCGGAGCCGAATAACAACGTTTCCATCGAAGAGGAGGTACGAACACTGTTTGTCAGTGGCCTACCAGTTGATATCAAACCACGGGAACTTTACCTTCTCTTCAGACCTTTTAAGGGTTATGAAGGGTCACTGATTAAGTTAACATCAAAACAGCCTGTTGGGTTTGTAACCTTTGACAGTCGTACTGGAGCTGAAGCTGCGAAAAATGCTCTAAATAATCTCTCAAAGTCTACCCATTGTGTCTTCTACAATTCAATGGCAGGGCCATTTTTGGAAAGAGGCCAGAATCCCCGTAGCCTTACGGGTATCCGTTTTGACCCCGAAAGTCCCCAGACCCTGCGCTTAGAGTTTGCTAAAGCCAACACGAAGATGGCAAAGAGTAAGCTGATGGCCACACCGAACCCCACAAATATCCACCCTGCTCTAGGAGCACACTTCATTGCACGGGACCCATATGATCTGACAGGGGCAGCACTGATCCCAGCATCGCCGGATGCCTGGACTCCTTACCCGCTGTACACCACGGAGCTGACCCCAGGCCTCCCTCACGCAGCCTTCACTTACCCGGcggctgctgccgctgctgcagCCCTCCACGCCCAGaTGCGCTGGTACCCTACTCCCTCTGAGACTTCCCAGCCTGGATGGAAGTCCCGGCAGTTTTGTTAGATATTTAGCCTCTGGAAAACACACCTTTTGTCCAGCTCAAGTGAGGTTTGCCAAGCTCTTCATTAATTTAATCAGGTTTATTTAATGGACAAATGTGCATTATTATAAACAAACCGTATTTATATCTCCTCTCGATGTCTCTGGGAGTCTGAGTTGAAACCATCTTGCTGTCGACAATCTGAGCTTATCCTCGGCAACTATTGTGGTACCATCTTAGCCCAGTCAAAACTCCATGGATCATAATTGCTGAGGAAAATTGACGCATTGAAGTTACTGTTAAGCTAGTCCTTCCATGGTTTACCGCAGCTCCTGGGAGGTTTAGAGGCATTAAGAGTCCTTGCATGTTAGTCTTTTTGGCATGAATTTAGAACGCAGAGTTCTGTGTATCCTAATTTTCTTAGTGTTTGTGTTGCCTCTTTGCCTTTTGGCCTAGACAgcgaaatgttttgttttccagtAGAACCTTGGTCTTACCTCTGTGAAAGTTAGGCTGTTGTGTAAATGGCTAATCTCGCATGGACCTTGTGAATGCATCCCTACGTTCTATGACAACCCCAGCCCTTATGATCATATCAATGTCTGTCATTATTTGAGCAAAGGAAAGTActaattttgtacttttttgcGTAATGTATATTTATGCATTTTTGTGCAACTAAAATAATGAACCTGTGTATAAGTTGGATGTTTAGTCATCTTTTTGGTGTTACTTTTTGATCCTATAATCCTGTTGACGtagttttaaagaagaaaaaagtgcaATTTGTTTAGGGGGAAATGGGTATCTGTCAAAAAATGGAAGTGTTCTGAATGTGGCTTGTGCCATTCTGCTAAAATGAGATTGCTGTAAAACGATCTTTCAGAATGTGAAACTGGACTACAAACTTAAAAGGTGGATCTTTCTGGGGGGCCATTTTGAAATGGGATTAGAGTGATGGAGGAATTTAGTTTGTGGTTTAGAAACATGTTTGTCTTTGTATCTGCTGTGCATAAGTTGTAAAAAATATTCCCATCTTATGAATAATAAAAGAAGTGAATGCA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36562 lncRNA upstream 409641 15062219 ~ 15065509 (+) True G27459
TU36556 lncRNA upstream 421531 15047877 ~ 15053619 (+) False LOC120556271
TU36558 lncRNA upstream 421531 15047877 ~ 15053619 (+) True LOC120556271
TU36557 lncRNA upstream 421531 15050283 ~ 15053619 (+) False LOC120556271
TU36548 lncRNA upstream 457645 15016584 ~ 15017505 (+) True G27449
TU36704 lncRNA downstream 37523 15523974 ~ 15531915 (+) False G27565
TU36705 lncRNA downstream 37523 15523974 ~ 15530314 (+) True G27565
TU36708 lncRNA downstream 47552 15534003 ~ 15535415 (+) True G27566
TU36709 lncRNA downstream 59040 15545491 ~ 15545779 (+) True G27567
TU36710 lncRNA downstream 59993 15546444 ~ 15546655 (+) True G27568
XM_039796045.1 mRNA upstream 28658 15441455 ~ 15446492 (+) True LOC120556433
XM_039795174.1 mRNA upstream 56375 15393784 ~ 15418775 (+) True LOC120555952
XM_039795175.1 mRNA upstream 56375 15396174 ~ 15418775 (+) False LOC120555952
XM_039795173.1 mRNA upstream 56375 15396175 ~ 15418775 (+) False LOC120555952
XM_039795408.1 mRNA upstream 82817 15374188 ~ 15392333 (+) False LOC120556051
XM_039795721.1 mRNA downstream 3948 15490399 ~ 15504450 (+) False cpeb1b
XM_039795723.1 mRNA downstream 3951 15490402 ~ 15504450 (+) False cpeb1b
XM_039795717.1 mRNA downstream 3952 15490403 ~ 15504450 (+) False cpeb1b
XM_039795718.1 mRNA downstream 3952 15490403 ~ 15504450 (+) False cpeb1b
XM_039795720.1 mRNA downstream 3953 15490404 ~ 15504450 (+) False cpeb1b
TU36647 other upstream 28758 15441477 ~ 15446392 (+) False LOC120556433
TU36145 other upstream 2237331 13235235 ~ 13237819 (+) True LOC120556202
TU36106 other upstream 2364811 13109757 ~ 13110339 (+) True G27086
XR_005638880.1 other upstream 3443422 12031621 ~ 12031728 (+) True LOC120556595
TU35313 other upstream 5615150 9847277 ~ 9860000 (+) True aldh1a3
XR_005638756.1 other downstream 2238097 17724548 ~ 17742734 (+) True LOC120555788
TU37478 other downstream 3075444 18561895 ~ 18568480 (+) False LOC120556478
TU38013 other downstream 4000795 19487246 ~ 19487533 (+) True G28581
XR_005638873.1 other downstream 4011287 19497738 ~ 19497873 (+) True LOC120556587
XR_005638872.1 other downstream 4011642 19498093 ~ 19498224 (+) True LOC120556586

Expression Profile