RNA id: TU36690


Basic Information

Item Value
RNA id TU36690
length 1903
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G27552
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 15479306 ~ 15505668 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggacccaacaattccaataatttccccaagagcaagcatttagagAAACAATggagaggaaaaacttcctttaggcagaaacctcggacagacccaggctcttggtgagCGGACATCTGCCGGTGCCGGTTATGGGTATGTTGAACgttggcaattatagtaacaaagaTAACGGAACTaggactagaaataatagttgtagcagttcagggcgtagtaggatgtagcaggacgcTGAGCAGGAACACGCtggcagctgcaaccatgatttaggtgccaccctgaTCCAAGAAAGTGGAGAAAACACAGACTccagggaataagctccccagagccaTTAGTAACAATCATtactgggacatgaatgcacacagatgaaaacaggaaagaaaagctcagtgtgtcaaaggtaGTCCCCCAGCAGTCTAGACAATGTCAGTATAGTAGTCTTTTAAAAGGTCATATTTTGTCAAATAAGTCAGTATTTCGTAATGTCATAATTTATAGTTTGTCAAAATAAGTCAAAGCAGCTCAAAGTATGCCATACCAATTGtcatagtatgccataaaaggTCATAGGACACACGCAATCATCTTCGTTCACTCAAAAACGCCCGTTATAGTAATGACTGTCTGCATACTGCGTTGGTCAGTAGTATGCGCACGCTGTATGAAACAGTTATCAATTTGTTTTGAGTATGCTAGGCCAGGCTTAGCTAGTTTCTGGTTTTTCAGTTTCAGTACGTACTGCTTTGCTGAGGTTTTTGGAAGTTGAATAGTTTAAGGAATATTCCAGTTAAATTGCATCAACAATCTGGCTGCTATGATACACTTTAAGATTGTATTAAAACCCCTTTACACTGAGATATATGAAAGGGATTTGTCATTTGTTGATAAAGCACCTGAGACAGgaaatgcgcacacacacacaacccaatTTGTAGTAAACTGGCAAGAACTGGTACAGAAAGTATCACTGTAGTACTCATGGCTCATTGACCTGTAAAATTTCCTCTTTTAAGCACAAAGTTAATTTGCAGTCCCGTGTCTAGGTTGAGGAAATTGCTGGAATTTGTGGCCAATGTGATTTGAAAACTTAACTTGAAACATCATCCGCAATGAACTAATTCAGTGATGACTTAAGGTTAACGAAACTAGGATTTCCAAAATACTCCAAAGTACCACCCCTAAATTAATGAAGAGTCCAGACATGTCCAGTAATGCTTAAACACCTTTATTGTGCCCAATCTGAACATATTCCACAACTGCAAGTAGCAGCAAACTTGGCAGACCACAATGAGGTAGACTTTCAAAACTCTAAAAAGCAGCTGGGCTAAGGGACAACAAGCTCAGCATGACAAACgtaatggataaagaaaagacACTTGGTCTTTGGCACACAGCTTATTATGAGTTTATGTCCAACTGGAACAAGAAGGCAAAATGGGATTAAGAAAGCATGGAATCATTTACTGGGGTCTACTCAAGCTCTGGATAGATTAAGTTTATCGTCAGCTAAGTGGAAGTTCTTACATTCAACAGGAAACAAGCAGCTGTTCCAACATAGGCGTGTCCCCGTGCTGATGtacaaaagtgattaaaaaccaCTGCCACCTCTCCACACGTGCAAATTAAAAAGTGCAAAAATCAAACTTAGTACAACAAATGTTCATTCACTCTCTCAACAGGATCCATCAGGTGCTTGAGAAACGATGGATTGCCCAGTTGAAGTGTACAAATGTTACACATTTAATACAACTGGACCAACAAAGCAAGTTAAAGTAGTACTTCCAACATTTTGTGCCCATTTAGCTGAAACTTGGAAgggcaaattaaaaaaagaaaaagccacgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36673 lncRNA downstream 32797 15444326 ~ 15446509 (-) True G27545
TU36615 lncRNA downstream 105215 15362034 ~ 15374091 (-) True G27499
TU36613 lncRNA downstream 105215 15373495 ~ 15374091 (-) False G27499
TU36611 lncRNA downstream 298286 15180739 ~ 15181020 (-) True G27497
TU36605 lncRNA downstream 325191 15149500 ~ 15154115 (-) True G27493
TU36724 lncRNA upstream 28332 15534000 ~ 15535337 (-) True G27582
TU36729 lncRNA upstream 40910 15546578 ~ 15546791 (-) True G27587
TU36736 lncRNA upstream 90945 15596613 ~ 15596867 (-) True G27594
XR_005638713.1 lncRNA upstream 312942 15818610 ~ 15848699 (-) True LOC120555431
XR_005638712.1 lncRNA upstream 313795 15819463 ~ 15848699 (-) False LOC120555431
XM_039795916.1 mRNA downstream 41818 15433422 ~ 15437488 (-) False LOC120556362
XM_039795919.1 mRNA downstream 41818 15433423 ~ 15437488 (-) True LOC120556362
XM_039795918.1 mRNA downstream 42513 15433422 ~ 15436793 (-) False LOC120556362
XM_039795177.1 mRNA downstream 51707 15418952 ~ 15427599 (-) True LOC120555953
XM_039795897.1 mRNA downstream 159263 15181720 ~ 15320043 (-) True tspan4a
XM_039795988.1 mRNA upstream 18676 15524344 ~ 15532010 (-) True LOC120556400
XM_039795399.1 mRNA upstream 31306 15536974 ~ 15578092 (-) False csnk1g1
XM_039795398.1 mRNA upstream 31306 15536974 ~ 15578092 (-) False csnk1g1
XM_039795397.1 mRNA upstream 31306 15536974 ~ 15578092 (-) False csnk1g1
XM_039795395.1 mRNA upstream 31306 15536974 ~ 15578092 (-) False csnk1g1
TU36517 other downstream 635401 14842713 ~ 14843905 (-) True G27420
TU36388 other downstream 1008961 14469758 ~ 14470345 (-) True G27321
XR_005638877.1 other downstream 2190042 13289210 ~ 13289264 (-) True LOC120556590
TU36095 other downstream 2383540 13069996 ~ 13095766 (-) True G27075
TU35932 other downstream 3174482 12304539 ~ 12304824 (-) True G26924
XR_005638870.1 other upstream 134101 15639769 ~ 15639960 (-) True LOC120556584
TU37150 other upstream 2002455 17508123 ~ 17513168 (-) False G27925
TU37147 other upstream 2004282 17509950 ~ 17513168 (-) False G27925
TU37149 other upstream 2004460 17510128 ~ 17513168 (-) True G27925
TU37410 other upstream 2712454 18218122 ~ 18220550 (-) True G28121

Expression Profile