RNA id: TU36785


Basic Information

Item Value
RNA id TU36785
length 1758
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G27627
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 15886918 ~ 15888823 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGACAATTTGTGGAATTTGACATGGCTGCAAAATGACAATAGacaatgtggaaaaaaatacacttgaacgacaaaaacaaacattgtcaATAATAAAGACAGAAGACATACTGATTTTATGTTCTTTCTTGGTTGCTACTGAGCAAACACTTTAGAGACAGGAGGTGGGGATGGGTTTGGgagtcgggggggggggtaacAATAGGTTTCATGAATAGAATGGCATTTGTCCACTACACTGTACATATGAACTGTACTGTACAATTACAATTGTTGTATGGCTGTTAAGCAGTGAATGCAGGGATTTCATACAAATTCCGTCATTCTTTACAGAGCTGGGATCCCCTTTGGCTCGAATACGCGCCAGCTGACTTGGTCCCTTTGATGGCGGTATTTCCcttgtaagggggaaaaaaagcagcaCAAACTTAAAACACATGAAGtggtttttctctttctctctcacacacacacacacacacacacaaatcatccACTGCCCCAATCCGTACATCTCTGTCCAAgatactcaaaaaaaaaaaagataaatatgacTTCAACTACCCAACAGAGGCTGGGGTTCCGGCTTTGTACAGTATTTATACCTGTATATTAAATGCTATAAAGAATTTCTGTGACATTAAAACTTAttaaataagggaaaaaataaatTTGTAGTAACAGAGCAACCACTGCTTACACTGATTGTTATGAACTGTAAACTCATAAAGCAGCTAATAATTGTGAGCTTTAAGTTCACTGTAACATCCGTGACGCTTGACGTTGCCTGATTTCTTCTCATTTACTGTCGTACAATGCTTCAGCTTTCCAGCTCATAAACATTCCCTTTTCTCTGTCCTCCTGCTCAGTGCGACTCCTCTTGGCGCTGAGTAAAGAGCTGCCCGAGGCACTGTGAGAGCATGGGTGGCAGTTTAGTCCACAGAAAAGGAGCCTTTCCACCGATTCCTGTCCCTCTGCCCAACATCTCCCCCCTCTGGAGGTGGAAACACTGTACACGGCACTTGGGGACACTTTTTTGCAGACTTCAAGAAAGAAAGGCAAAGCAAGAGTGCTTTAAGGAGTGGAGATACGTCGCCATTGCGTTACCTCCAATTGAGAACATATACACCTGCTAGGGAGTTAGATAGGGAGTGATTTGGTGGCGCAGTGTTCTTCATACCATGAATTCATTACTGCCATACAATACCAGCTGCTGTGGTATGTCTGGAGGGTCCCTGCCTTGGCGACTGCCTTCTCTGGAGTGCCTCAGAGTTGAATGCTTGGCCCCTTTAAGTTTCTGTTTGCCCTTCTCCGGATTGAAGGTGCCTCGGCTGGTAAACTGGGGCCTTTCGTCATACGCGCTTTCCTGATCTCCTGTAGGGCTACTGTCTATGCTGTCTGAACGGGAGGCTTGAGACGCATTAAGAGCCTGGGCCTGGGCCTGTGCTTGTGCCTGGGCCTGGGCTGGACCTGAGCCCAAGGTAGGAGACTTGGAGTGGAAACGAAAGCGCCGGGTGGtggcagaggaggaagaggatgatgGCTGGAAATGTGATGAGGAAGAGTAGGAGGAAACACTGGAGCAAGAGTCCACAGAGTCCAGGGAGTCAGGCTGCCGGCGGAGAGCGTGCCGTCGGGGGCTCGTCATGTCAGATCTCCGGGGCCACGGAGACGTCAAGACTGGACCTCTCTCTGCAATGAAAGGCAAAGACaaggcaagtttatttttaatcttttctctCCGATTATACATGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36771 lncRNA upstream 67549 15818608 ~ 15819369 (+) True G27613
TU36710 lncRNA upstream 340263 15546444 ~ 15546655 (+) True G27568
TU36709 lncRNA upstream 341139 15545491 ~ 15545779 (+) True G27567
TU36708 lncRNA upstream 351503 15534003 ~ 15535415 (+) True G27566
TU36704 lncRNA upstream 355003 15523974 ~ 15531915 (+) False G27565
TU36790 lncRNA downstream 3516 15892339 ~ 15895904 (+) True G27632
TU36835 lncRNA downstream 160056 16048879 ~ 16068425 (+) True G27663
TU36836 lncRNA downstream 166865 16055688 ~ 16068425 (+) False G27663
TU36850 lncRNA downstream 188195 16077018 ~ 16077406 (+) True G27671
TU36851 lncRNA downstream 192689 16081512 ~ 16081872 (+) True G27672
XM_039795723.1 mRNA upstream 382468 15490402 ~ 15504450 (+) False cpeb1b
XM_039796267.1 mRNA downstream 129445 16018268 ~ 16021643 (+) False senp8
XM_039796266.1 mRNA downstream 129585 16018408 ~ 16021643 (+) True senp8
XM_039796262.1 mRNA downstream 129589 16018412 ~ 16021643 (+) False senp8
XM_039796265.1 mRNA downstream 129927 16018750 ~ 16021643 (+) False senp8
XM_039796264.1 mRNA downstream 129947 16018770 ~ 16021643 (+) False senp8
TU36678 other upstream 400497 15475164 ~ 15486421 (+) False LOC120556001
TU36647 other upstream 440526 15441477 ~ 15446392 (+) False LOC120556433
TU36145 other upstream 2649099 13235235 ~ 13237819 (+) True LOC120556202
TU36106 other upstream 2776579 13109757 ~ 13110339 (+) True G27086
XR_005638880.1 other upstream 3855190 12031621 ~ 12031728 (+) True LOC120556595
XR_005638756.1 other downstream 1835725 17724548 ~ 17742734 (+) True LOC120555788
TU37478 other downstream 2673072 18561895 ~ 18568480 (+) False LOC120556478
TU38013 other downstream 3598423 19487246 ~ 19487533 (+) True G28581
XR_005638873.1 other downstream 3608915 19497738 ~ 19497873 (+) True LOC120556587
XR_005638872.1 other downstream 3609270 19498093 ~ 19498224 (+) True LOC120556586

Expression Profile