RNA id: TU36850



Basic Information


Item Value
RNA id TU36850
length 389
lncRNA type inter_gene
GC content 0.58
exon number 1
gene id G27671
representative True

Chromosome Information


Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 16077018 ~ 16077406 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CTGTGGCGTAGGACAGGTCGTATTGTCCTGAGAGCAGGGGGTATCCCAGGTGGTGGTGCGAGGGCATGATGCGCTGGGAGGGTGAGGAGCGTGGTCGGTccatgtctctttctctttccctctcacGCTCCCGCTCCCTTTCCCGATCTCTGTCTCCGCCAGCTCCTCTGTCctgctctctttccctctcatgAGGTGGCTTGTCACCCACTGTGGGGGATTTGCTCTTGTATTGGCTGGCGTGCTGATGCAGGATATCCAGGGCTTTGGAGTCCGCTGCCGTTTTGGTGACAGTGGGGCTAGCGCGGGATTTGTCACCGCCTTCCTCAGCTCCGGCCATTTTATTGCCATATGGAGAAAACGGATAGCCTCCAGGAAGGTACGAACCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU36835 lncRNA upstream 8593 16048879 ~ 16068425 (+) True G27663
TU36836 lncRNA upstream 8593 16055688 ~ 16068425 (+) False G27663
TU36790 lncRNA upstream 181114 15892339 ~ 15895904 (+) True G27632
TU36785 lncRNA upstream 188195 15886918 ~ 15888823 (+) True G27627
TU36771 lncRNA upstream 257649 15818608 ~ 15819369 (+) True G27613
TU36851 lncRNA downstream 4106 16081512 ~ 16081872 (+) True G27672
TU36853 lncRNA downstream 53775 16131181 ~ 16132039 (+) True G27674
TU36854 lncRNA downstream 82079 16159485 ~ 16159699 (+) True G27675
TU36871 lncRNA downstream 176917 16254323 ~ 16267657 (+) True G27692
TU36882 lncRNA downstream 221830 16299236 ~ 16299647 (+) True G27703
XM_039796266.1 mRNA upstream 55375 16018408 ~ 16021643 (+) True senp8
XM_039794735.1 mRNA downstream 224375 16301781 ~ 16312679 (+) True cln6a
XM_039794734.1 mRNA downstream 224376 16301782 ~ 16312679 (+) False cln6a
XM_039794736.1 mRNA downstream 235317 16312723 ~ 16320946 (+) True calml4a
XM_039795542.1 mRNA downstream 333627 16411033 ~ 16412571 (+) True LOC120556141
XM_039794154.1 mRNA downstream 418429 16495835 ~ 16544791 (+) False coro2ba
TU36678 other upstream 590597 15475164 ~ 15486421 (+) False LOC120556001
TU36647 other upstream 630626 15441477 ~ 15446392 (+) False LOC120556433
TU36145 other upstream 2839199 13235235 ~ 13237819 (+) True LOC120556202
TU36106 other upstream 2966679 13109757 ~ 13110339 (+) True G27086
XR_005638880.1 other upstream 4045290 12031621 ~ 12031728 (+) True LOC120556595
XR_005638756.1 other downstream 1647142 17724548 ~ 17742734 (+) True LOC120555788
TU37478 other downstream 2484489 18561895 ~ 18568480 (+) False LOC120556478
TU38013 other downstream 3409840 19487246 ~ 19487533 (+) True G28581
XR_005638873.1 other downstream 3420332 19497738 ~ 19497873 (+) True LOC120556587
XR_005638872.1 other downstream 3420687 19498093 ~ 19498224 (+) True LOC120556586

Expression Profile