RNA id: XM_039795573.1


Basic Information

Item Value
RNA id XM_039795573.1
length 7103
RNA type mRNA
GC content 0.49
exon number 8
gene id LOC120556162
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 16071569 ~ 16159882 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAACCCGGTGCTCCGTGGAGTGTGACAGTTCAATCCGACTGGAGCTCCTCCTCCTGGATTTCCTccccgctgctgctgcttggcTACATTGTATCAGTTCCCACACGAAGAACTACCACGGCACTCATCCAGAAACGGTGAATACGGAGGAATTAACCTGGATGGGAAGCTATCGGCTGTGGGATTAATTGCCAGAAGGTCGCGGGAGAGGACTGGGCTTGTGTCGGGCTTGAGACGGCAccgataaaaataaaaatgccctCAGGACTCGGGTTGTTTTCGATGAGGACGGTATCTCGAAGTGTGATGGCAGAAGTCCAGTGAATCGCTggcctcccctcctctcttgtGTTGGGTGTCTTGGGGAGTACGCTGCCACTGCTTTCTGGTgcttcagattttttttttttttttttgtagaggtTTTATTATACTTCACATTTAACTGTGATATTTTTTTATGGAGTTCGCACCACCATGGACAGACCAGGGTTTGGAATAGGAGTGGCTAGCTAAGTCAgGCAAAATGTGGTTAAATGGAACTGGAACGAGTAGACCGTGAGGATTCTCTAACCCTTGCCCCTGAGTCCCAACCGTCTGAGAGGGTGTCGGACCTCACTGAGGCAATCCTGGGCCGTTGGCTCTAAAATGTCCCTAAGTGGTGGCACTGCAGGCGGGAAAGGTGTGGACTCTAATGCGGTGGACACTTACGATAGCGGGGATGAGTGGGATATCGGTGTTGGAAATCTGATTATTGACCTAGACGCGGACTTAGAGAAGGACAAACTTGAGATGTCGGGCACCAAGGACGGCATGGCGGCACCACCCAGTGCAGTGGCAGCGTTGCCGGACAACATCAGGTTTGTGAGTCCAGTGTCTGGCTCTCAAGGCAAGGAAAGCAAATCCAAATACAAGCGCAGCAAGAACTCTAAAGACAATAGTAGCAAAGCTTCGGCTGGCGATGGGGGCAAGAAAGAAACTCCAGGACGGACTCAAGCGGAGCCAACGGGCACAGCAGCGAGCGCAGGAGCCGCCGGCAACAATTCCACCTCTGGGAAGAACATTGAAAAGGGGGGCAAAGCCTCCAGAGGTGTTCTGAGTggtaaaaaagagaaagaaggggcTAGTGGGAAAGGTAAGAAGGACAAAACAGACGGAGCCCCAGTCGTGGCAATCGCTGCTGCGGAGAAGGATGTTGTGTCTCAGGCCCAGGTTGCTTTGGGGAATAGTCGCACTGCGTCCTTTGAGAACACACAATCAACAGACTTGGCAGAAGCCAATCAAATGGGGAATATTGCACTTGAACCTGTAGGGATCGTACCAGCCTTGACCGCAAAAACTGAACCAGAGGAGGTGGAAAATGGTAGTAGTGAATGCAAGACGTTAAAGAAggtgaaaaatgaaaagATGGAATCTCCTGTCTCCACGCCAgctcctccccccctccacctcctgGCCACAGTGGGCAACAGTGAGATTTCCTCGCCGTGTGAGCAGATAATGGTGCGCACGCGCTCCGTGGCCGTGAACACATCTGATGTGGCCCTGGCTACCGAACCAGAGTGCTTGGGGCCCTGCGAGCCCGGCACAAGTGTCAACCTCGAAGGCATTGTGTGGCAGGAAACTGAAGACGGCATGCTGGTGGTTAATGTTACTTGGAGAAACAAGACATACGTGGGCACCTTGTTGGACTGTACACGGCATGACTGGGCTCCCCCCAGGTTTTGCGAATCCCCTACAAGCGATCTAGAGATGAGAAATGGCCGTGGTCGAGGCAAGCGAATGAGACCGAACAGCAACACCCCTATCACCGAGAACAGTAACTCCTCAGACAACAAGggcaccaacaacaacaagacgCGTGCTGCCTCTAACAGCAAGGGCCGACGGGGCAGCCAGACGCCATCAGAGCGCCGTACCCCGCctaacaacaacacagaggaTATCAAGGCCAGTCCCTCCTCAGCTGGAAAACGCAAGACCAAACCAGCCTCGGACATGGAACCCAATTCCAGCTCCGAGGACACCAAAGGCAACAAACGTATGCGTACAAATTCCAACAGTGGAGGGGTGGGACCAACAGGTCTCCCTATTCCTTCCATTAAGACTGAGCCACTTCCCCCTCCCCTCGATCGCAGCTGCCCCTCTCCAGTTCTTATTGACTGCCCGCACCCTAACTGCAACAAAAAGTACAAGCACATCAATGGTCTCAAGTACCACCAAGCACGCGCTCACAATGATGATGACATCAAGTTGGAAatggatggagagagtgaaTATGGAGAGGACTCAACTCTCCACCCTGAACCAGGGAACTGTAATGGAGCCTCGATCTCTCAGAAAGGATGTTTGTCTCCAGCACGTTCAGTTACTCCAAAAGGCAGGAACTTTGATGCACAGAGTCCTTCACCATCTCCTGGCAAGTTTGGTTCAAAGCagagtaaaaagaaaattgctGAGGCAGATCCAGAGGTGGGAGGTACTCCGACAGACGGGTGTGAAGATGGGCCATGCCTTACTGATGAGGCCAGTAATGATGGCATAGATGATAAGAGAGGATCAGACAAGTCTAAAAAGGCTGGCACAAAGGCTGATAAAATGCCCCAGAAAAACATGAAGTCACCACGGTCCGTTGGCCCTGGCTCGACAGCATCCCAGCAGATGTACCCTTTTCCTCCTGGAAACCCAAATTGTTCCCCGGGGCTTACCCCAATCATACAAGGGATTCCCAAGAGTCCCCAAATGAAGGGCACTCAGCCTAAACCCCCTGTCATTGGAGATGCTGCCTCAAGTAGCtccaaagacaagaaaaagaaagacaagaagaaaaaagatggtgggaaggaggctgacagcccCAAGCCTCAGGGAAAGGGAGGGAAACAGGAGGACGGAAAGCTGACATACTCTGAGCCTTCTGATCAAGGCAACAAGGGGGAAGGACTCCTCAATGGTTCCTCAGATCCTCATCAGAGTCGTTTGGCCAGTATCAAGGCTGAGGCTGACAAAATTTACAGCTTTTCTGACAATGCCCCTAGCCCATCCATTGGTGTAGCCAGTCGGATAGACGGCAGTGGGATGCCACAGCCTCTCACACCACTTCACGTAGTGAACCAGAATGGTGCGGACAACTCCTCAGTCAAAACCAATAGCCCAGCCTATTCAGACATTTCAGATGCTGGTGAGGACGGTGAAGGGAAAATAGAAGGCGTGAAAGTCAGGACAGAGGACCAAGGCATCAgggaaagtgtcaaaaaagcgcTCTTTCCAAACCAGACACCCAACAAAGATTCCCCGTACTATCCCGGCTACGAGACGTATTACTCGCCCAATTACGTAAACCCCAGTCCTGGCGGGCCCAATCCAGGAACGCCAGTGGCTGAAGGTCAGGTTAAGATCAAAAGGGAAGAGGACCAGGACCAAGTTGAGGAAAAAGTCAAGGTTGAGGTTCATGAAGACCGCAAACCTGACATCATTGCTcctagccagcagcagcagcagcagcaacaacaacaacaacaacaacagcagcagcagcagcagcaacaacaacaacaacaacagcagcagcagcaacagcagcagcaacaacagcagcagcaacaacagcagcagcagcaacaacaacaacagcaacagcagcagcagcaacagcaacagcagcatcagcaacaacagcagcagcagcaaccctCAGTCATCCAACAGCGATCCAACATGTACATGCAACCTCTTTACTACAACCAGTATGCTTACGTCCCCCCGTATGCATACCATCCCGATCAAGCCTACCATAACCACTTAATGAACACCAACCCAGCCTACCGGCAACAGTACGAGGAGCGGCAGCGACAGATGGCTGCCGAACAGCACCGCGCCGAGAAGAAGTCAGACATCGCCCTAAAAGAACGAGAAGCCTCCATGAAGGAGGAGTGGAAACAAAAGAGCCCGATGCCGCCAAGCCTCTCCAAAGCCCCAAGTCAGTCAGACCTCGGAAAGACGCCGCAGGCCCCAAGCAAATCCAGGGAGTCGCCCTCTGAGCCCTCCTCCAAATCCCTTGGAAGCATAAAGGGGGAGGACCCAAAGTCCCAGCAAGCGGAGGGGCTAAAGATGAAGCTGACTGAAGGGGGCCACCATGGAAAGGAAGACTCCAAGCAAGCACTGGAGTCCAGAGGTCAAGCAGGGATGGAGCAGGCCATGTGGTACAGACAGCAGTACCCCGAGAGCCAGAAACCCCAAGCAGAAGACGAACACCAGCAGCAACAACCTCGATGGAAAGATGAAAGGGACCGAGAACGGGAACGGGATCGTAAATTAAAGGATGACAGGCCCCGGCCCAAGGACAGTCAAAGTGGGCCCAAGGAGGACGGCAAAGAGGGTAGTGATCCCAGAATCACTTCTGAGGACCACCGGGTCATGAGCAAAGACTCTCGTTCTAATCCACACATGCAGTTCTCATCACCACTAGCACAGCACCAAGGCTACATGCCCTACATGCATGGTTACCCCTATGGACAAGGCTATGACCCCAACCACCCTGGATACAGGGGCATGCCCGCAGTCATGATGCCGAATTACCCAGGTTCGTACCTTCCTGGAGGCTATCCGTTTTCTCCATATGGCAATAAAATGGCCGGAGCTGAGGAAGGCGGTGACAAATCCCGCGCTAGCCCCACTGTCACCAAAACGGCAGCGGACTCCAAAGCCCTGGATATCCTGCATCAGCACGCCAGCCAATACAAGAGCAAATCCCCCACAGTGGGTGACAAGCCACCTcatgagagggaaagagagcagGACAGAGGAGCTGGCGGAGACAGAGATCGGGAAAGGGAGCGGGAGCgtgagagggaaagagaaagagacatggACCGACCACGCTCCTCACCCTCCCAGCGCATCATGCCCTCGCACCACCACCTGGGATACCCCCTGCTCTCAGGACAATACGACCTGTCCTACGCCACAGGGAAACCTGACCGTCACACCTCAACCCTGCAAAGATTCATGTGACTGGCTCACATGAGAAGAAAGTCTCCCGGGCGTTCCCTTTTTTTAACACATCAGTTGAATGGTGTTTCGATCTGTATTTTTTAGTTCGTCTGCCACGAGGCTAGGCAGatggtcgttttttttttttttttttgggtcctCCCcctctcgtaaatgaccccaaaTTTGTCCAAACCCTCGGACTGGAACAGAAGTGATAATAAGCCAGGTTCAAAGCCATCGCTCTGCCTCACCATGCAGAGCTAACACCAACCCGCTGATCATCTAGTCTTTGCACTGTCAACAGATACAATGCAAAAAGAGACTATTGGACTGCCGGaacagcttttttttgttgttgttgtttctttctttctttgactgcattgttgttgttgttgtttgtttttttttgggtcaCACGCAGAAAGAAATTGgcaggggattttttttttttttttttgaggagtTGGGTGGCTGATGGGGAAAAGGGGGGAGTCAAACTAAATTAAAGactgaaaagaaaaagtgaatCCTATTGAAATGATTTCAACTCTACGTCTTTTGGCTTATCGTATGCCGTGAAACAACAGTACATCCTTAACTTGACACACGTTTGGCTATATTTTGTGGGGGGGAGAGGGAATATGGCAACAGCTGCTTTCTTCAGAGACTTGAGAGCCTGAGACTGaagtttattaatttttttttttttgtcgttttccATCATCATTGTCAATATCCATCCTCTTTGAACCCTCAGTTCTTGTTTCAGGGATGATGACGacgttgtttgttttttttttttttttttttgcgaagGGACCGCACACACCTCAATGGAGAATAAACACtattcatgttttcatttttttttttttattttttctcaatTAATACTTCACTTGTACTCCGTATCGTTGTGTTCATCCTTGAATGTGTCTGATGCTGGTAGGAGTCCTGTTTTCCTCACAATGAAAACGTCACATCTGTCGTTGCACTCAAAACGGTGAAGCCACATTAGCGAGCGGTTAATTCGCTGGGGGGGGGAGCGGGGGTGGAGAGTTGCCATCGCTGCATTTTTGCCACTCGTTGGGGGTTTTTACTGTAAGATTGTGCTTCATCCAGCTCGTcgcattttgatttatttttttatttctgtaaaaGATGTGAAATTTCACTCaacttgtgtatttttttttgctgtaaatTTAGACTTTTGGCctacttttttttgtgcataaatgtttatatttatCCCCGCACGCAacggtttaaaaaaacaacaacaacctgtcaCTGTTAAATAGCTTTCAGCCTTCGCGGCGTTTAACATCATGTGCTCGGATCGTTGTTTCCCTAGACATCTTGCTGCGCTGCTTGTTTTCCCCCTGCTTTGGTTGTCTTGCTGcacttgttcattttttttttttttttatttatttatttttttttttatcatcaagCTACGGTCGCATTAATCCCAACATGCAGCGTGCAATTAGACTGGACCCAGACCTCCGAATCACTGTCCACAtctcagatcttttttttttttttcagtgattcAGTGGCAACTCTTAACTGGCAGATTAAGCGAAAACTAAACGGTAAAACGGACTGATATTTCAGGCTGTCGTTCGTTGTCAAAAAGGGGCAGAAATGTCTCTGGGTGCTTCGCTTGCTTGTGTGGCTTCACCATAACACACGTTCACCTCGGGACAGCTAGCTCGGTGTTCCTAACCGGCGGCTAGCTTTGGATTTAACTGGGCCAATTAGTCGGATACCTCAGACGCCGGCTTTCTCTGTTCAGTTGCTGCCTGTGCAGTTTAGGTCATGAtcccaaaaacaaaaatctttcAGCTGTTAACAGAACGAGCCAATCAGATGCAGACAatgaactgaaataaaaaaaaaaaaacaagggagAGCAAAAGCTAACGTGGTTTGAAACAAGTGAAATGGAACCTTGATCGCGCACACGTGACCGAAGTAAGCAGGCTCAAAGTTCAGCTGAGAAGAAGCATGTTGCTCTAGGCTCGCCTTTTGGATCTCAGACGGGTGGCACCGCTCTGTAAATTCACTTTAAAtccacagacaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36829 lncRNA downstream 43698 16028887 ~ 16029172 (-) True G27659
XR_005638713.1 lncRNA downstream 224171 15818610 ~ 15848699 (-) True LOC120555431
XR_005638712.1 lncRNA downstream 224171 15819463 ~ 15848699 (-) False LOC120555431
XR_005638714.1 lncRNA downstream 224171 15829888 ~ 15848699 (-) False LOC120555431
TU36736 lncRNA downstream 476003 15596613 ~ 15596867 (-) True G27594
TU36877 lncRNA upstream 7078 16166959 ~ 16168421 (-) True G27698
TU36904 lncRNA upstream 162082 16321963 ~ 16324191 (-) False LOC120555730
TU36909 lncRNA upstream 227015 16386896 ~ 16387172 (-) True G27725
TU36911 lncRNA upstream 245931 16405812 ~ 16408563 (-) False LOC120555730
TU36913 lncRNA upstream 249589 16409470 ~ 16409936 (-) True G27729
XM_039795029.1 mRNA downstream 4335 16031670 ~ 16068535 (-) True gramd2aa
XM_039795033.1 mRNA downstream 4339 16031670 ~ 16068531 (-) False gramd2aa
XM_039795032.1 mRNA downstream 8286 16031670 ~ 16064584 (-) False gramd2aa
XM_039795031.1 mRNA downstream 8287 16031670 ~ 16064583 (-) False gramd2aa
XM_039794730.1 mRNA downstream 55158 15887011 ~ 16017712 (-) False myo9aa
XM_039795566.1 mRNA upstream 8594 16168475 ~ 16254605 (-) True trip4
XM_039795567.1 mRNA upstream 101013 16260894 ~ 16294060 (-) True LOC120556157
XM_039794737.1 mRNA upstream 163456 16323337 ~ 16408868 (-) True LOC120555730
XM_039794152.1 mRNA upstream 259982 16419863 ~ 16492643 (-) True itga11a
XM_039794151.1 mRNA upstream 259982 16419863 ~ 16492444 (-) False itga11a
XR_005638870.1 other downstream 432910 15639769 ~ 15639960 (-) True LOC120556584
TU36517 other downstream 1228965 14842713 ~ 14843905 (-) True G27420
TU36388 other downstream 1602525 14469758 ~ 14470345 (-) True G27321
XR_005638877.1 other downstream 2783606 13289210 ~ 13289264 (-) True LOC120556590
TU36095 other downstream 2977104 13069996 ~ 13095766 (-) True G27075
TU37150 other upstream 1348242 17508123 ~ 17513168 (-) False G27925
TU37147 other upstream 1350069 17509950 ~ 17513168 (-) False G27925
TU37149 other upstream 1350247 17510128 ~ 17513168 (-) True G27925
TU37410 other upstream 2058241 18218122 ~ 18220550 (-) True G28121
TU37599 other upstream 2222824 18382705 ~ 18383642 (-) True G28265

Expression Profile