RNA id: XR_005638864.1


Basic Information

Item Value
RNA id XR_005638864.1
length 853
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id LOC120556470
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 16672602 ~ 16681853 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cttTTGTCTTGTGTCAGATCATTTTGTTAGTTTGTGCCTGCTGTGTCGCCACGTGTCAGTTTGAATTAGGTTCTTTGCTCCCTGGATTTCCATGGGTCTCAAGTTTCTGGTCACAGCCATCAACTCTTCCATGTGTGCTACCCACTTCCAGATGAAGGCCATGGAACAGGACATGGTAACACGGCGCACTGGCTCCTTGAACACTCCATACCCATTAGCTTTGCCAACTCAGTGGGTGCAGCGCTGCTTTGTGTGGTGGTAAATTTGACTATCATCATCTTCTACAGTCTacctctcctctctgctccaGTCCATCAAGAAAAGAAACATGATAAAGGTCCAAGGAAAGCCTCAGCCAAGGTCTGCCCCTGCTACTAAACCTCAGGCTTCAAGTCACGGCTAAGAGATTCCGGCTGGTTACGAGACATATGGACATGTGAAAAGTGTGCAATATGGGTGATTTTGAAGAACACAGCTATGAGGAACTGACATAATCATAATGTGCAGTCGGCATTAAACTCATGGTGGGTAACGGCCTTCAGACAACACTGGGATTACTGCTATTACAAAAAAGACACAGGAATTTATGACAAgggaaagaaaatgttttgctCTTGAGTTTGCGCTGCCTGCAAAGTAGCTTAAAACTAAAAACTTAAATAATTCAAAGTTCAGTTACTGTTAATGCATGAATACAGAGTAAATGTTTTCAGGTTTGTTTATTTCCCTCCATATGATTGCTGTTTCTGTCCCTGTGACCTGTGAGACATGTCACATTGTTCTTTTGATACAAAACTGAAAGTATTTATGTACATagttattatgatttttttaaataaaccaaCCAAACCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36892 lncRNA upstream 266873 16405528 ~ 16405729 (+) True G27711
TU36891 lncRNA upstream 288353 16383992 ~ 16384249 (+) True G27710
TU36890 lncRNA upstream 298260 16374113 ~ 16374342 (+) True G27709
TU36889 lncRNA upstream 320617 16351784 ~ 16351985 (+) True G27708
TU36887 lncRNA upstream 333830 16338387 ~ 16338772 (+) True G27706
XR_005638865.1 lncRNA downstream 17166 16698971 ~ 16700822 (+) True LOC120556471
XR_005638866.1 lncRNA downstream 17166 16698971 ~ 16700822 (+) False LOC120556471
XR_005638827.1 lncRNA downstream 48759 16730564 ~ 16807781 (+) True LOC120556216
TU37004 lncRNA downstream 190210 16872015 ~ 16949931 (+) False G27810
TU37003 lncRNA downstream 266734 16948539 ~ 16949931 (+) True G27810
XM_039795182.1 mRNA upstream 9873 16651817 ~ 16662729 (+) True paqr5b
XM_039795179.1 mRNA upstream 29755 16581385 ~ 16642847 (+) True glceb
XM_039795178.1 mRNA upstream 29755 16581385 ~ 16642847 (+) False glceb
XM_039795180.1 mRNA upstream 29755 16606133 ~ 16642847 (+) False glceb
XM_039795181.1 mRNA upstream 40245 16581385 ~ 16632357 (+) False glceb
XM_039795995.1 mRNA downstream 19230 16701035 ~ 16726691 (+) False LOC120556405
XM_039795996.1 mRNA downstream 19230 16701035 ~ 16726691 (+) False LOC120556405
XM_039795994.1 mRNA downstream 19234 16701039 ~ 16726691 (+) True LOC120556405
XM_039795998.1 mRNA downstream 19239 16701044 ~ 16726691 (+) False LOC120556405
XM_039795997.1 mRNA downstream 19240 16701045 ~ 16726691 (+) False LOC120556405
TU36678 other upstream 1186181 15475164 ~ 15486421 (+) False LOC120556001
TU36647 other upstream 1226210 15441477 ~ 15446392 (+) False LOC120556433
TU36145 other upstream 3434783 13235235 ~ 13237819 (+) True LOC120556202
TU36106 other upstream 3562263 13109757 ~ 13110339 (+) True G27086
XR_005638880.1 other upstream 4640874 12031621 ~ 12031728 (+) True LOC120556595
XR_005638756.1 other downstream 1042743 17724548 ~ 17742734 (+) True LOC120555788
TU37478 other downstream 1880090 18561895 ~ 18568480 (+) False LOC120556478
TU38013 other downstream 2805441 19487246 ~ 19487533 (+) True G28581
XR_005638873.1 other downstream 2815933 19497738 ~ 19497873 (+) True LOC120556587
XR_005638872.1 other downstream 2816288 19498093 ~ 19498224 (+) True LOC120556586

Expression Profile